Variant report

Variant	rs72810950
Chromosome Location	chr10:90822640-90822641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10509566	0.83[EUR][1000 genomes]
rs11812412	0.83[EUR][1000 genomes]
rs11812685	0.93[EUR][1000 genomes]
rs11812866	0.83[EUR][1000 genomes]
rs11814780	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11815318	0.89[AFR][1000 genomes]
rs11819743	0.92[EUR][1000 genomes]
rs1319097	0.89[AFR][1000 genomes]
rs17115398	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs17378029	0.89[AFR][1000 genomes]
rs17378454	0.93[EUR][1000 genomes]
rs17449853	0.89[AFR][1000 genomes]
rs17464311	0.83[EUR][1000 genomes]
rs1892337	0.92[EUR][1000 genomes]
rs1961812	0.85[EUR][1000 genomes]
rs4442451	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61854883	0.83[EUR][1000 genomes]
rs73370726	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv467416	chr10:90815975-90889997	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv551842	chr10:90815975-90889997	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv895880	chr10:90816060-90874029	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90801400-90829400	Weak transcription	Aorta	Aorta
2	chr10:90803200-90825000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:90807800-90825000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:90808000-90823800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:90821400-90824800	Weak transcription	NHLF	lung
6	chr10:90822200-90825600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:90822400-90825800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:90822600-90822800	Enhancers	Brain Hippocampus Middle	brain
9	chr10:90822600-90822800	Enhancers	Fetal Heart	heart
10	chr10:90822600-90823000	Enhancers	Colon Smooth Muscle	Colon
11	chr10:90822600-90823000	Enhancers	Ovary	ovary
12	chr10:90822600-90823000	Enhancers	NHDF-Ad	bronchial
13	chr10:90822600-90823200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:90822600-90823200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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