Variant report
| Variant | rs72811728 |
|---|---|
| Chromosome Location | chr2:56161217-56161218 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000202344 | Chromatin interaction |
| ENSG00000272180 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs55738646 | 0.85[AFR][1000 genomes] |
| rs55756503 | 0.85[AFR][1000 genomes] |
| rs55837620 | 0.85[AFR][1000 genomes] |
| rs55886642 | 0.85[AFR][1000 genomes] |
| rs55985909 | 0.85[AFR][1000 genomes] |
| rs72811706 | 0.85[AFR][1000 genomes] |
| rs72811707 | 0.85[AFR][1000 genomes] |
| rs72811709 | 0.85[AFR][1000 genomes] |
| rs72811710 | 0.85[AFR][1000 genomes] |
| rs72811711 | 0.85[AFR][1000 genomes] |
| rs72811712 | 0.85[AFR][1000 genomes] |
| rs72811713 | 0.85[AFR][1000 genomes] |
| rs72811716 | 0.85[AFR][1000 genomes] |
| rs72811717 | 0.85[AFR][1000 genomes] |
| rs72811718 | 0.85[AFR][1000 genomes] |
| rs72811719 | 0.85[AFR][1000 genomes] |
| rs72811727 | 1.00[AFR][1000 genomes] |
| rs7340147 | 0.85[AFR][1000 genomes] |
| rs7340150 | 0.85[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531374 | chr2:55653723-56299784 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
| 2 | nsv519184 | chr2:56154316-56163904 | Enhancers | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv874161 | chr2:56154316-56203798 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
