Variant report
Variant | rs72811866 |
---|---|
Chromosome Location | chr2:49047878-49047879 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10187109 | 0.94[ASN][1000 genomes] |
rs10210521 | 0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10210646 | 0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs12469769 | 0.86[ASN][1000 genomes] |
rs12477968 | 0.84[ASN][1000 genomes] |
rs12478030 | 0.84[ASN][1000 genomes] |
rs13001380 | 0.88[ASN][1000 genomes] |
rs13418054 | 0.85[ASN][1000 genomes] |
rs17037685 | 0.85[ASN][1000 genomes] |
rs17037688 | 0.85[ASN][1000 genomes] |
rs17037700 | 0.82[ASN][1000 genomes] |
rs34307840 | 0.88[ASN][1000 genomes] |
rs34682390 | 0.84[ASN][1000 genomes] |
rs35457516 | 0.85[ASN][1000 genomes] |
rs35486816 | 0.85[ASN][1000 genomes] |
rs4254550 | 0.90[ASN][1000 genomes] |
rs4271811 | 0.85[ASN][1000 genomes] |
rs4325806 | 0.91[ASN][1000 genomes] |
rs4462824 | 0.84[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs55649687 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs55671226 | 1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs55671322 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs56406984 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs61349130 | 0.91[ASN][1000 genomes] |
rs62137442 | 0.90[ASN][1000 genomes] |
rs62137443 | 0.89[ASN][1000 genomes] |
rs6419618 | 0.89[ASN][1000 genomes] |
rs6708130 | 0.85[ASN][1000 genomes] |
rs72811865 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs72811883 | 1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs72811894 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs72811897 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs72811898 | 0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs72811899 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs72813703 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs72813705 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs72813714 | 0.91[ASN][1000 genomes] |
rs72823278 | 0.88[ASN][1000 genomes] |
rs72823284 | 0.88[ASN][1000 genomes] |
rs72823285 | 0.85[ASN][1000 genomes] |
rs72823286 | 0.85[ASN][1000 genomes] |
rs733726 | 0.86[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1002793 | chr2:48771220-49466550 | ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
2 | nsv1004965 | chr2:48796170-49443587 | Bivalent Enhancer Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
3 | nsv535684 | chr2:48796170-49443587 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
4 | nsv498119 | chr2:48808834-49422647 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
5 | nsv998864 | chr2:49015878-49230000 | Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
6 | nsv1014434 | chr2:49016279-49053699 | Enhancers Weak transcription Strong transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
7 | nsv1011016 | chr2:49031921-49053699 | Weak transcription ZNF genes & repeats Enhancers Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
8 | esv2763577 | chr2:49035249-49053711 | Enhancers Weak transcription Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
9 | nsv518963 | chr2:49038154-49052293 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
10 | nsv1011157 | chr2:49041121-49061439 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
11 | nsv1008459 | chr2:49041121-49062097 | ZNF genes & repeats Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
12 | nsv519859 | chr2:49045984-49052293 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:48994600-49080200 | Weak transcription | Stomach Smooth Muscle | stomach |
2 | chr2:49046600-49053200 | Weak transcription | Ovary | ovary |