Variant report

Variant	rs7281259
Chromosome Location	chr21:40232103-40232104
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:40227171..40228878-chr21:40230837..40233170,2	K562	blood:
2	chr21:40227996..40231150-chr21:40232050..40235725,3	MCF-7	breast:
3	chr21:40177576..40179439-chr21:40231925..40234002,2	MCF-7	breast:
4	chr21:40231386..40233733-chr21:40237311..40239746,2	K562	blood:

Variant related genes	Relation type
ENSG00000157557	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1009123	0.81[CEU][hapmap]
rs13047489	0.81[EUR][1000 genomes]
rs13047716	0.81[EUR][1000 genomes]
rs13048664	0.81[EUR][1000 genomes]
rs1534827	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs1882734	0.83[EUR][1000 genomes]
rs1893203	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1893204	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2015748	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs2836700	0.84[CEU][hapmap]
rs2836703	0.81[EUR][1000 genomes]
rs2836713	1.00[CHB][hapmap]
rs374575	0.80[CEU][hapmap];0.90[GIH][hapmap];0.81[EUR][1000 genomes]
rs455328	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs456574	0.87[EUR][1000 genomes]
rs461522	1.00[CHB][hapmap]
rs464366	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs464476	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs468057	0.81[EUR][1000 genomes]
rs55938987	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7276433	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7281107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7281192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7281242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7281698	0.81[CEU][hapmap]
rs8129453	1.00[CHB][hapmap]
rs877372	0.80[EUR][1000 genomes]
rs909103	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062425	chr21:40172471-40380976	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544442	chr21:40172471-40380976	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv587477	chr21:40228920-40512004	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40225800-40234400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr21:40226000-40233600	Weak transcription	Spleen	Spleen
3	chr21:40226000-40242200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr21:40226200-40232800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr21:40229000-40235000	Enhancers	Fetal Thymus	thymus
6	chr21:40229000-40235000	Enhancers	Dnd41	blood
7	chr21:40229200-40236400	Enhancers	Thymus	Thymus
8	chr21:40229400-40232200	Weak transcription	Fetal Lung	lung
9	chr21:40229400-40233000	Weak transcription	Right Atrium	heart
10	chr21:40229600-40232800	Weak transcription	Right Ventricle	heart
11	chr21:40229600-40245400	Weak transcription	Left Ventricle	heart
12	chr21:40230400-40232400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr21:40230600-40232200	Weak transcription	HepG2	liver
14	chr21:40230800-40232200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr21:40231000-40232400	Weak transcription	Fetal Heart	heart
16	chr21:40231200-40232200	Weak transcription	Fetal Muscle Leg	muscle
17	chr21:40231600-40236200	Enhancers	Fetal Muscle Trunk	muscle
18	chr21:40231800-40232400	Enhancers	NHEK	skin
19	chr21:40232000-40232400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr21:40232000-40232800	Enhancers	HMEC	breast
21	chr21:40232000-40233800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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