Variant report

Variant	rs72812885
Chromosome Location	chr10:90898886-90898887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAS-4	chr10:90898801-90899215	NONHSAT015500

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs55810685	0.87[AMR][1000 genomes]
rs55889782	0.86[AMR][1000 genomes]
rs56041738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56087010	0.86[AMR][1000 genomes]
rs56089908	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56102605	0.86[AMR][1000 genomes]
rs56271123	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67147226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67636062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810924	0.86[AMR][1000 genomes]
rs72810933	0.86[AMR][1000 genomes]
rs72810934	0.86[AMR][1000 genomes]
rs72810936	0.86[AMR][1000 genomes]
rs72810942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810954	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810971	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810973	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810990	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810991	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810997	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72812803	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72812819	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72812823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72812825	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72812841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72812857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831944	chr10:90822654-90967018	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	esv2758235	chr10:90835064-91017486	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2759775	chr10:90835064-91017486	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv895881	chr10:90842431-90940003	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
8	nsv551844	chr10:90879304-90899444	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90898000-90899000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr10:90898200-90899600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:90898400-90899000	Enhancers	Hela-S3	cervix
4	chr10:90898400-90899200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:90898600-90899200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:90898800-90899200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links