Variant report

Variant	rs72814163
Chromosome Location	chr10:89647943-89647944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89640838..89642681-chr10:89647239..89649894,3	K562	blood:
2	chr10:89646944..89651726-chr10:89652897..89657139,4	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72814182	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72816125	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv551832	chr10:89630424-89650759	Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1050406	chr10:89632138-89657906	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89625600-89663000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:89628400-89662000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:89631000-89663400	Weak transcription	Brain Angular Gyrus	brain
4	chr10:89633000-89663400	Weak transcription	Pancreas	Pancrea
5	chr10:89633400-89675800	Weak transcription	Small Intestine	intestine
6	chr10:89633800-89655600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:89636000-89655400	Weak transcription	Brain Substantia Nigra	brain
8	chr10:89636200-89661800	Weak transcription	Brain Anterior Caudate	brain
9	chr10:89636800-89649400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:89639000-89655400	Weak transcription	Fetal Heart	heart
11	chr10:89639000-89655400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:89639000-89656200	Weak transcription	Stomach Mucosa	stomach
13	chr10:89640000-89648000	Weak transcription	K562	blood
14	chr10:89641600-89663000	Weak transcription	Esophagus	oesophagus
15	chr10:89641800-89648000	ZNF genes & repeats	GM12878-XiMat	blood
16	chr10:89642400-89652400	Weak transcription	Aorta	Aorta
17	chr10:89642600-89657000	Strong transcription	Dnd41	blood
18	chr10:89643600-89648400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:89643800-89648600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr10:89644600-89648000	Strong transcription	HSMM	muscle
21	chr10:89644600-89648200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:89644600-89648200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:89644600-89648400	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr10:89644600-89650400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr10:89644600-89654000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr10:89644800-89648200	Strong transcription	Hela-S3	cervix
27	chr10:89644800-89648600	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr10:89644800-89648600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr10:89644800-89648800	Strong transcription	Fetal Intestine Large	intestine
30	chr10:89645000-89651000	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr10:89645200-89648400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:89645200-89648600	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr10:89645200-89651400	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr10:89645600-89648000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr10:89645600-89648000	Strong transcription	NH-A	brain
36	chr10:89645600-89648000	Strong transcription	NHLF	lung
37	chr10:89645600-89648200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr10:89645600-89648400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr10:89645600-89649400	Strong transcription	Placenta	Placenta
40	chr10:89645800-89648000	Strong transcription	Fetal Stomach	stomach
41	chr10:89645800-89648200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr10:89645800-89648400	Strong transcription	Fetal Lung	lung
43	chr10:89645800-89648600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr10:89646200-89648000	Strong transcription	Fetal Muscle Trunk	muscle
45	chr10:89646200-89648200	Strong transcription	NHEK	skin
46	chr10:89646200-89648400	Strong transcription	Fetal Muscle Leg	muscle
47	chr10:89646400-89648000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr10:89646400-89648000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr10:89646400-89648000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
50	chr10:89646400-89648400	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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