Variant report

Variant	rs72814755
Chromosome Location	chr10:91016889-91016890
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91010532..91012655-chr10:91015052..91017566,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107798	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1120668	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1332324	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7100313	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72814764	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	esv2758235	chr10:90835064-91017486	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2759775	chr10:90835064-91017486	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
6	nsv895882	chr10:91002927-91021645	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91011400-91021600	Weak transcription	Fetal Brain Male	brain
2	chr10:91011800-91020400	Weak transcription	Stomach Mucosa	stomach
3	chr10:91012000-91020400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:91012000-91021800	Weak transcription	Right Atrium	heart
5	chr10:91012400-91017400	Weak transcription	Ovary	ovary
6	chr10:91014200-91017200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:91014400-91023400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:91014600-91017200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:91015600-91017800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr10:91015600-91018000	Enhancers	Fetal Stomach	stomach
11	chr10:91015800-91017000	Enhancers	Fetal Muscle Leg	muscle
12	chr10:91015800-91017800	Enhancers	Brain Substantia Nigra	brain
13	chr10:91015800-91019200	Enhancers	Brain Hippocampus Middle	brain
14	chr10:91016000-91017200	Weak transcription	Brain Anterior Caudate	brain
15	chr10:91016000-91020000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:91016000-91020400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:91016000-91020400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:91016200-91017200	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr10:91016200-91017400	Enhancers	Brain Cingulate Gyrus	brain
20	chr10:91016400-91017200	Flanking Active TSS	Fetal Lung	lung
21	chr10:91016400-91017400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr10:91016400-91020200	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr10:91016600-91017800	Enhancers	Brain Angular Gyrus	brain
24	chr10:91016600-91020400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:91016600-91020400	Weak transcription	Adipose Nuclei	Adipose
26	chr10:91016800-91017800	Enhancers	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links