Variant report

Variant	rs72817122
Chromosome Location	chr5:114909334-114909335
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:114908239..114910015-chr5:114914437..114916676,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs72815264	1.00[AFR][1000 genomes]
rs72817114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72817124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72817130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72817141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv830455	chr5:114761542-114938284	Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1032234	chr5:114785557-114911527	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv1796164	chr5:114854685-114936768	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114901400-114922400	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:114902400-114911200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:114904800-114911200	Weak transcription	HSMMtube	muscle
4	chr5:114906200-114910600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr5:114906400-114910400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:114906800-114910200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:114907600-114911000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr5:114907800-114918200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr5:114908200-114909800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:114908200-114911000	Enhancers	HUVEC	blood vessel
11	chr5:114908200-114918600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:114908400-114909600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr5:114908400-114911200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr5:114908400-114912400	Enhancers	NHDF-Ad	bronchial
15	chr5:114908600-114909400	Enhancers	Fetal Heart	heart
16	chr5:114908600-114912200	Enhancers	Osteobl	bone
17	chr5:114908800-114909400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr5:114908800-114909400	Enhancers	NHLF	lung
19	chr5:114908800-114909600	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr5:114908800-114910200	Weak transcription	Brain Angular Gyrus	brain
21	chr5:114908800-114911600	Enhancers	GM12878-XiMat	blood
22	chr5:114908800-114915200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr5:114908800-114918600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr5:114909000-114909400	Weak transcription	HSMM	muscle
25	chr5:114909000-114910000	Weak transcription	Brain Substantia Nigra	brain
26	chr5:114909000-114910200	Weak transcription	NHEK	skin
27	chr5:114909000-114911200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:114909000-114911200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr5:114909000-114911200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr5:114909000-114914400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr5:114909000-114914400	Weak transcription	Brain Hippocampus Middle	brain
32	chr5:114909000-114914600	Weak transcription	Brain Anterior Caudate	brain
33	chr5:114909000-114914800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr5:114909000-114918800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr5:114909000-114919200	Weak transcription	Left Ventricle	heart
36	chr5:114909000-114919200	Weak transcription	Psoas Muscle	Psoas
37	chr5:114909200-114910200	Weak transcription	NH-A	brain
38	chr5:114909200-114911000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr5:114909200-114911200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr5:114909200-114912800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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