Variant report

Variant	rs72820095
Chromosome Location	chr10:90341844-90341845
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17345638	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72820074	0.83[AFR][1000 genomes]
rs72820075	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv430254	chr10:90265420-90500520	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1044680	chr10:90316066-90466092	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv540740	chr10:90316066-90466092	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1037657	chr10:90329910-90367890	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv551839	chr10:90334835-90422136	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90312200-90342400	Weak transcription	Ovary	ovary
2	chr10:90315400-90342400	Weak transcription	Aorta	Aorta
3	chr10:90319200-90342000	Weak transcription	Pancreas	Pancrea
4	chr10:90321000-90342000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr10:90326800-90342400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:90331000-90342400	Weak transcription	Psoas Muscle	Psoas
7	chr10:90331400-90342400	Weak transcription	Left Ventricle	heart
8	chr10:90331600-90342400	Weak transcription	Esophagus	oesophagus
9	chr10:90331800-90342000	Weak transcription	Gastric	stomach
10	chr10:90339600-90342200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr10:90341800-90342000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:90341800-90342000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:90341800-90342000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr10:90341800-90342000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:90341800-90342000	Enhancers	Brain Cingulate Gyrus	brain
16	chr10:90341800-90342000	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr10:90341800-90342000	Enhancers	Small Intestine	intestine
18	chr10:90341800-90342000	Enhancers	Spleen	Spleen
19	chr10:90341800-90342000	Weak transcription	NHDF-Ad	bronchial
20	chr10:90341800-90342200	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr10:90341800-90342200	Enhancers	Adipose Nuclei	Adipose
22	chr10:90341800-90342200	Enhancers	Brain Anterior Caudate	brain
23	chr10:90341800-90342200	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr10:90341800-90342200	Enhancers	Brain Substantia Nigra	brain
25	chr10:90341800-90342200	Enhancers	Colon Smooth Muscle	Colon
26	chr10:90341800-90342200	Enhancers	Osteobl	bone
27	chr10:90341800-90342400	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr10:90341800-90342400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr10:90341800-90342400	Enhancers	Liver	Liver
30	chr10:90341800-90342400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr10:90341800-90343600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr10:90341800-90343800	Active TSS	Skeletal Muscle Female	skeletal muscle
33	chr10:90341800-90343800	Active TSS	Stomach Smooth Muscle	stomach

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