Variant report

Variant	rs72822152
Chromosome Location	chr10:90467906-90467907
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90466849..90468565-chr10:90471171..90472681,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17433712	0.93[AMR][1000 genomes]
rs72822172	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv430254	chr10:90265420-90500520	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv831941	chr10:90410488-90587332	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
6	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
7	nsv1043015	chr10:90467067-90593692	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90463200-90468800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:90465000-90468000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:90465000-90468000	Enhancers	HMEC	breast
4	chr10:90465400-90468000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:90465600-90468000	Enhancers	NHEK	skin
6	chr10:90465600-90469000	Enhancers	Hela-S3	cervix
7	chr10:90466000-90468400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr10:90466200-90468000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:90466600-90468000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:90466600-90468000	Enhancers	Fetal Lung	lung
11	chr10:90466600-90468000	Enhancers	HSMM	muscle
12	chr10:90466600-90468000	Enhancers	NHDF-Ad	bronchial
13	chr10:90466600-90468000	Enhancers	Osteobl	bone
14	chr10:90466600-90468200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:90466600-90468200	Enhancers	HUVEC	blood vessel
16	chr10:90466800-90468200	Enhancers	NH-A	brain
17	chr10:90467000-90468000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
18	chr10:90467000-90468000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:90467000-90468000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr10:90467000-90468000	Flanking Active TSS	A549	lung
21	chr10:90467000-90468400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
22	chr10:90467200-90468000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
23	chr10:90467200-90468000	Enhancers	HSMMtube	muscle
24	chr10:90467200-90468200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:90467600-90468000	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr10:90467600-90468200	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr10:90467800-90468000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
28	chr10:90467800-90468400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell

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