Variant report

Variant	rs7282287
Chromosome Location	chr21:16494256-16494257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr21:16434159..16439664-chr21:16490964..16496422,11	MCF-7	breast:
2	chr21:16377405..16378014-chr21:16493921..16494784,3	MCF-7	breast:
3	chr21:16493234..16497215-chr21:16543613..16545905,3	MCF-7	breast:
4	chr21:16492929..16496497-chr21:16570239..16574662,7	MCF-7	breast:
5	chr21:16492050..16494386-chr21:16497521..16500358,3	K562	blood:
6	chr21:16492732..16495693-chr21:16564937..16568393,3	MCF-7	breast:
7	chr21:16433887..16439613-chr21:16491773..16496133,5	MCF-7	breast:
8	chr21:16493018..16495690-chr21:16500294..16501873,2	MCF-7	breast:
9	chr21:16486684..16489820-chr21:16491291..16494292,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000236471	Chromatin interaction
ENSG00000180530	Chromatin interaction

rs_ID	r²[population]
rs41417546	1.00[YRI][hapmap]
rs41475045	1.00[YRI][hapmap]
rs7276414	1.00[YRI][hapmap]
rs7283880	1.00[YRI][hapmap]

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16493000-16497600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr21:16493200-16494800	Enhancers	Fetal Brain Male	brain
3	chr21:16493200-16495400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr21:16493200-16495600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr21:16493400-16495200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr21:16493400-16495400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr21:16493600-16494400	Enhancers	Liver	Liver
8	chr21:16493600-16494400	Enhancers	Pancreas	Pancrea
9	chr21:16493600-16494800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr21:16493600-16494800	Enhancers	HUVEC	blood vessel
11	chr21:16493600-16495000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr21:16493600-16495000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr21:16493600-16495000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr21:16493600-16495000	Enhancers	Left Ventricle	heart
15	chr21:16493600-16495000	Enhancers	Right Atrium	heart
16	chr21:16493600-16495000	Enhancers	Small Intestine	intestine
17	chr21:16493600-16495000	Enhancers	Stomach Mucosa	stomach
18	chr21:16493600-16495200	Enhancers	H9 Cell Line	embryonic stem cell
19	chr21:16493600-16495200	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr21:16493600-16495200	Enhancers	Brain Substantia Nigra	brain
21	chr21:16493600-16495200	Enhancers	Psoas Muscle	Psoas
22	chr21:16493600-16495200	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr21:16493600-16495200	Enhancers	HSMM	muscle
24	chr21:16493600-16495400	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr21:16493600-16495400	Enhancers	Fetal Muscle Leg	muscle
26	chr21:16493800-16494400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr21:16493800-16494400	Enhancers	Hela-S3	cervix
28	chr21:16493800-16494600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr21:16493800-16494800	Enhancers	Primary hematopoietic stem cells	blood
30	chr21:16493800-16494800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr21:16493800-16494800	Flanking Active TSS	Adipose Nuclei	Adipose
32	chr21:16493800-16494800	Enhancers	Fetal Lung	lung
33	chr21:16493800-16495000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr21:16493800-16495000	Enhancers	Muscle Satellite Cultured Cells	--
35	chr21:16493800-16495200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr21:16493800-16495200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr21:16493800-16495200	Enhancers	Pancreatic Islets	Pancreatic Islet
38	chr21:16493800-16495200	Enhancers	Ovary	ovary
39	chr21:16494000-16494400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr21:16494000-16494400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr21:16494000-16494400	Flanking Active TSS	Brain Anterior Caudate	brain
42	chr21:16494000-16494400	Enhancers	Fetal Brain Female	brain
43	chr21:16494000-16494400	Enhancers	Fetal Intestine Small	intestine
44	chr21:16494000-16494400	Enhancers	Fetal Kidney	kidney
45	chr21:16494000-16494600	Enhancers	NH-A	brain
46	chr21:16494000-16495000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr21:16494000-16495200	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr21:16494000-16495200	Enhancers	HSMMtube	muscle
49	chr21:16494000-16495600	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr21:16494200-16494400	Enhancers	HUES48 Cell Line	embryonic stem cell

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