Variant report

Variant	rs72824117
Chromosome Location	chr16:80637571-80637572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:80630459..80632249-chr16:80637355..80638879,2	MCF-7	breast:
2	chr16:80621060..80623345-chr16:80635851..80638748,2	MCF-7	breast:
3	chr16:80633536..80635269-chr16:80635731..80638453,2	MCF-7	breast:
4	chr16:80636259..80637791-chr16:80640662..80642901,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72824137	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv1056083	chr16:80636184-80666779	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80625400-80645600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr16:80625600-80637800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr16:80626000-80639800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr16:80626200-80637800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr16:80626200-80640000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr16:80626200-80640000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr16:80626600-80637800	Weak transcription	Liver	Liver
8	chr16:80626800-80645800	Weak transcription	Right Ventricle	heart
9	chr16:80629200-80647600	Weak transcription	NHEK	skin
10	chr16:80630600-80668000	Weak transcription	Fetal Kidney	kidney
11	chr16:80631000-80638000	Weak transcription	Gastric	stomach
12	chr16:80631000-80641400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr16:80631400-80638000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr16:80633800-80640800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr16:80633800-80645200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr16:80634000-80647800	Weak transcription	NHLF	lung
17	chr16:80634200-80640800	Weak transcription	Adipose Nuclei	Adipose
18	chr16:80634200-80663600	Weak transcription	Brain Anterior Caudate	brain
19	chr16:80634400-80640200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr16:80634400-80641000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr16:80634600-80641000	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr16:80634800-80637800	Weak transcription	Spleen	Spleen
23	chr16:80634800-80645600	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr16:80635000-80640000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr16:80635000-80651200	Weak transcription	Brain Hippocampus Middle	brain
26	chr16:80635200-80637800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr16:80635200-80639000	Strong transcription	Placenta	Placenta
28	chr16:80635400-80637800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr16:80635400-80655600	Weak transcription	Brain Angular Gyrus	brain
30	chr16:80636000-80639800	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr16:80636000-80640200	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr16:80636000-80648200	Strong transcription	Hela-S3	cervix
33	chr16:80636200-80637800	Weak transcription	Pancreas	Pancrea
34	chr16:80636200-80638800	Strong transcription	Aorta	Aorta
35	chr16:80636200-80638800	Strong transcription	Lung	lung
36	chr16:80636200-80639800	Weak transcription	Esophagus	oesophagus
37	chr16:80636400-80641800	Weak transcription	Fetal Stomach	stomach
38	chr16:80636400-80645000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr16:80636400-80647800	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr16:80636600-80637600	Enhancers	HUVEC	blood vessel
41	chr16:80636600-80637800	Weak transcription	Duodenum Mucosa	Duodenum
42	chr16:80636600-80638600	Strong transcription	Primary hematopoietic stem cells	blood
43	chr16:80636600-80641800	Weak transcription	Fetal Intestine Large	intestine
44	chr16:80636800-80638800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr16:80636800-80653600	Weak transcription	HSMMtube	muscle
46	chr16:80637000-80637800	Weak transcription	Fetal Intestine Small	intestine
47	chr16:80637000-80639400	Weak transcription	Colon Smooth Muscle	Colon
48	chr16:80637000-80640000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr16:80637000-80640400	Weak transcription	Brain Cingulate Gyrus	brain
50	chr16:80637000-80653400	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links