Variant report

Variant	rs72824964
Chromosome Location	chr5:167415349-167415350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72835627	1.00[ASN][1000 genomes]
rs72835655	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167397200-167420800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167408000-167419800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr5:167408200-167419800	Weak transcription	NHEK	skin
4	chr5:167408400-167418400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:167408400-167419200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:167413800-167419800	Weak transcription	Right Ventricle	heart
7	chr5:167413800-167432000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr5:167414600-167415600	Enhancers	Fetal Heart	heart
9	chr5:167414600-167415800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr5:167414600-167416000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr5:167414600-167416000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr5:167414800-167415600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:167414800-167415600	Enhancers	Fetal Brain Male	brain
14	chr5:167415000-167415600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:167415000-167415800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr5:167415000-167415800	Enhancers	H9 Cell Line	embryonic stem cell
17	chr5:167415000-167416800	Enhancers	Left Ventricle	heart
18	chr5:167415200-167416600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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