Variant report

Variant	rs72826525
Chromosome Location	chr2:115441313-115441314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs17043547	1.00[EUR][1000 genomes]
rs59873976	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61273778	1.00[EUR][1000 genomes]
rs72826512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72826514	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72826516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72826517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72826518	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72826519	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72826527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72826537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72830357	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72830359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72830360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72830362	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72830363	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72830364	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72830365	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72830367	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72830371	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72830373	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72830374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72830376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72830377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72830385	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72830388	1.00[EUR][1000 genomes]
rs72830391	0.89[EUR][1000 genomes]
rs72830402	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874904	chr2:114751691-115605062	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv431502	chr2:115139566-115617936	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv834338	chr2:115320185-115481229	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv431524	chr2:115425650-115530770	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115437000-115441400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr2:115439600-115441400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr2:115439600-115441400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr2:115439800-115441800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:115440600-115441400	Enhancers	Primary T cells from cord blood	blood
6	chr2:115440600-115442200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr2:115440800-115442200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr2:115441000-115442600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr2:115441000-115443000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr2:115441200-115441800	Enhancers	Primary T cells fromperipheralblood	blood
11	chr2:115441200-115441800	Enhancers	Fetal Thymus	thymus
12	chr2:115441200-115442200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr2:115441200-115442400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links