Variant report

Variant	rs72826941
Chromosome Location	chr10:116151884-116151885
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:116109698..116111215-chr10:116151432..116153174,2	MCF-7	breast:
2	chr10:116148220..116151013-chr10:116151881..116155168,3	MCF-7	breast:
3	chr10:116151670..116155313-chr10:116155442..116158491,3	MCF-7	breast:
4	chr10:116151729..116154077-chr10:116154696..116157816,3	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72826943	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116127600-116153000	Weak transcription	Aorta	Aorta
2	chr10:116134000-116157600	Weak transcription	Colonic Mucosa	Colon
3	chr10:116140200-116152600	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:116143200-116152600	Weak transcription	Fetal Intestine Small	intestine
5	chr10:116145600-116152000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:116145600-116153000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:116146000-116152800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:116146400-116157000	Enhancers	HMEC	breast
9	chr10:116146600-116153000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr10:116148000-116154000	Enhancers	HSMM	muscle
11	chr10:116148800-116152800	Weak transcription	Brain Anterior Caudate	brain
12	chr10:116149000-116155600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:116149000-116160000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr10:116149600-116152600	Weak transcription	Left Ventricle	heart
15	chr10:116149600-116152800	Weak transcription	Right Atrium	heart
16	chr10:116149600-116152800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr10:116149600-116153000	Weak transcription	Fetal Kidney	kidney
18	chr10:116149800-116153000	Weak transcription	HSMMtube	muscle
19	chr10:116149800-116154600	Weak transcription	Pancreas	Pancrea
20	chr10:116150000-116152400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr10:116150000-116153000	Weak transcription	NH-A	brain
22	chr10:116150800-116153000	Weak transcription	NHLF	lung
23	chr10:116150800-116155200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:116151000-116152000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:116151000-116153000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:116151000-116153200	Genic enhancers	NHEK	skin
27	chr10:116151400-116152200	Genic enhancers	Fetal Muscle Trunk	muscle
28	chr10:116151400-116152400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
29	chr10:116151400-116153200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr10:116151400-116155000	Genic enhancers	Fetal Stomach	stomach
31	chr10:116151600-116152200	Genic enhancers	Stomach Smooth Muscle	stomach
32	chr10:116151600-116152800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr10:116151600-116153000	Enhancers	Spleen	Spleen
34	chr10:116151600-116153000	Enhancers	HUVEC	blood vessel
35	chr10:116151600-116153400	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr10:116151600-116154400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:116151600-116157000	Enhancers	Fetal Muscle Leg	muscle
38	chr10:116151600-116158400	Enhancers	GM12878-XiMat	blood
39	chr10:116151800-116152600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr10:116151800-116152800	Weak transcription	Fetal Thymus	thymus
41	chr10:116151800-116152800	Weak transcription	Ovary	ovary
42	chr10:116151800-116153200	Weak transcription	A549	lung
43	chr10:116151800-116153800	Enhancers	Primary hematopoietic stem cells	blood
44	chr10:116151800-116153800	Weak transcription	Esophagus	oesophagus
45	chr10:116151800-116162600	Weak transcription	Lung	lung

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