Variant report

Variant	rs72828838
Chromosome Location	chr2:111461490-111461491
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:111457344..111460792-chr2:111461200..111464523,4	MCF-7	breast:
2	chr2:111449352..111451677-chr2:111460329..111462604,2	K562	blood:
3	chr2:111450177..111452870-chr2:111458026..111461829,3	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs28452164	0.82[EUR][1000 genomes]
rs4255970	0.82[EUR][1000 genomes]
rs55682108	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55849112	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55857945	0.82[EUR][1000 genomes]
rs55875504	0.82[EUR][1000 genomes]
rs55875530	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55927063	0.82[EUR][1000 genomes]
rs56010803	0.81[AMR][1000 genomes]
rs56031628	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56062220	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56110941	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56146538	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56165253	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56177778	0.82[EUR][1000 genomes]
rs56181028	0.82[EUR][1000 genomes]
rs56238325	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56260092	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56272335	0.82[EUR][1000 genomes]
rs56289191	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56320021	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57318054	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57862073	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58054304	0.82[EUR][1000 genomes]
rs58569659	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58588523	0.82[EUR][1000 genomes]
rs59258102	0.82[EUR][1000 genomes]
rs59413237	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60357733	0.82[EUR][1000 genomes]
rs61124407	0.82[EUR][1000 genomes]
rs61637608	0.83[AMR][1000 genomes]
rs66616139	0.82[EUR][1000 genomes]
rs72828836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72828843	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72828844	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72828845	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72828846	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72828849	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72828851	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72828852	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72828854	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72828856	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72828857	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72828859	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72828861	0.82[EUR][1000 genomes]
rs72830976	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72830979	0.82[EUR][1000 genomes]
rs72830980	0.82[EUR][1000 genomes]
rs72830982	0.82[EUR][1000 genomes]
rs72830984	0.82[EUR][1000 genomes]
rs72830985	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72830986	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72830989	0.82[EUR][1000 genomes]
rs72830990	0.83[AMR][1000 genomes]
rs72830993	0.82[EUR][1000 genomes]
rs72830996	0.83[AMR][1000 genomes]
rs72830997	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72831000	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72832803	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72832804	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72832809	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72832810	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72832813	0.82[EUR][1000 genomes]
rs72832815	0.82[EUR][1000 genomes]
rs72832816	0.82[EUR][1000 genomes]
rs72832817	0.82[EUR][1000 genomes]
rs72832818	0.82[EUR][1000 genomes]
rs72832837	0.81[AMR][1000 genomes]
rs72832838	0.81[AMR][1000 genomes]
rs72832839	0.81[AMR][1000 genomes]
rs72832843	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008581	chr2:110826262-111487021	Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv874836	chr2:110983050-111463391	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv874837	chr2:111367727-111463391	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv582696	chr2:111367727-111469138	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv874838	chr2:111376870-112046226	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	nsv874839	chr2:111400934-111868010	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1008758	chr2:111415136-111626467	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv535890	chr2:111415136-111626467	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:111458400-111461600	Weak transcription	K562	blood
2	chr2:111459600-111462000	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr2:111460000-111461800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr2:111460200-111461600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr2:111460200-111462000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr2:111460600-111462000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr2:111461000-111461600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr2:111461000-111461800	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr2:111461200-111461800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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