Variant report

Variant	rs72829014
Chromosome Location	chr5:147319133-147319134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10035454	0.93[ASN][1000 genomes]
rs10038786	0.93[ASN][1000 genomes]
rs10043166	0.93[ASN][1000 genomes]
rs13361066	0.93[ASN][1000 genomes]
rs17107473	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17704205	0.93[ASN][1000 genomes]
rs2112599	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4487480	0.84[AFR][1000 genomes]
rs56363654	0.93[ASN][1000 genomes]
rs72829016	0.93[ASN][1000 genomes]
rs72829024	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3334831	chr5:147165950-147339765	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1028477	chr5:147255013-147416217	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147318600-147319400	Enhancers	NHEK	skin
2	chr5:147318600-147319800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:147318800-147319400	Enhancers	Esophagus	oesophagus
4	chr5:147318800-147319600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:147318800-147319800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:147318800-147319800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:147318800-147319800	Enhancers	Placenta Amnion	Placenta Amnion
8	chr5:147319000-147319400	Enhancers	HMEC	breast
9	chr5:147319000-147320000	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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