Variant report

Variant	rs72829106
Chromosome Location	chr6:13595472-13595473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:13594654..13597328-chr6:13598596..13601832,4	K562	blood:
2	chr6:13572042..13575671-chr6:13594976..13597521,3	K562	blood:
3	chr6:13593118..13602779-chr6:13610915..13617941,16	K562	blood:
4	chr6:13594170..13595685-chr6:13604517..13607350,2	MCF-7	breast:
5	chr6:13594654..13597328-chr6:13598596..13600672,2	K562	blood:
6	chr6:13592972..13596401-chr6:13611564..13614564,3	K562	blood:
7	chr6:13593712..13595899-chr6:13596044..13598245,2	MCF-7	breast:
8	chr6:13587486..13591723-chr6:13593101..13596768,5	K562	blood:
9	chr6:13573888..13575914-chr6:13592707..13597506,4	MCF-7	breast:
10	chr6:13591447..13596407-chr6:13601014..13606482,5	K562	blood:
11	chr6:13594729..13597639-chr6:13615367..13617083,2	MCF-7	breast:
12	chr6:13594502..13596902-chr6:13614017..13616033,2	MCF-7	breast:
13	chr6:13586392..13588827-chr6:13593586..13598177,4	K562	blood:
14	chr6:13592961..13595907-chr6:13614776..13617941,3	K562	blood:
15	chr6:13591957..13593669-chr6:13594889..13596566,2	K562	blood:
16	chr6:13573878..13575751-chr6:13594203..13596504,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000124523	Chromatin interaction
ENSG00000261071	Chromatin interaction
ENSG00000225921	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2253217	0.89[ASN][1000 genomes]
rs2804921	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs72829106	SIRT5	cis	Thyroid	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13575600-13608200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:13575600-13613800	Weak transcription	Stomach Mucosa	stomach
3	chr6:13575600-13614400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:13575800-13597000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:13575800-13600000	Weak transcription	A549	lung
6	chr6:13575800-13614200	Weak transcription	HUVEC	blood vessel
7	chr6:13575800-13614600	Weak transcription	Right Atrium	heart
8	chr6:13576200-13596600	Weak transcription	HMEC	breast
9	chr6:13576200-13614400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:13578600-13601200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:13580400-13614800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:13585000-13600800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:13585600-13613800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:13586800-13601600	Strong transcription	Primary B cells from cord blood	blood
15	chr6:13586800-13602200	Strong transcription	Fetal Stomach	stomach
16	chr6:13586800-13602400	Strong transcription	Brain Inferior Temporal Lobe	brain
17	chr6:13586800-13603000	Strong transcription	Primary T cells from cord blood	blood
18	chr6:13586800-13606800	Strong transcription	Stomach Smooth Muscle	stomach
19	chr6:13586800-13608000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:13587000-13599400	Strong transcription	Fetal Intestine Small	intestine
21	chr6:13587000-13602000	Strong transcription	Adipose Nuclei	Adipose
22	chr6:13587000-13602400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:13587000-13603000	Strong transcription	Fetal Muscle Leg	muscle
24	chr6:13587000-13608600	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr6:13587800-13600800	Weak transcription	HSMMtube	muscle
26	chr6:13588400-13596600	Weak transcription	Psoas Muscle	Psoas
27	chr6:13588400-13614200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr6:13588600-13596600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:13588600-13600800	Weak transcription	NHDF-Ad	bronchial
30	chr6:13588600-13611800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:13588600-13614000	Weak transcription	NHLF	lung
32	chr6:13588600-13614400	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr6:13588800-13614600	Weak transcription	Small Intestine	intestine
34	chr6:13589000-13596600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr6:13589000-13608000	Strong transcription	Liver	Liver
36	chr6:13589000-13611800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr6:13589000-13614400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr6:13589800-13599800	Strong transcription	Spleen	Spleen
39	chr6:13590400-13601600	Strong transcription	Right Ventricle	heart
40	chr6:13590400-13608000	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr6:13590800-13599400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr6:13590800-13601600	Strong transcription	Duodenum Mucosa	Duodenum
43	chr6:13591000-13597600	Strong transcription	H1 Cell Line	embryonic stem cell
44	chr6:13591000-13598600	Strong transcription	Brain Anterior Caudate	brain
45	chr6:13591000-13601600	Strong transcription	Brain Substantia Nigra	brain
46	chr6:13591000-13602200	Strong transcription	Ovary	ovary
47	chr6:13591000-13602600	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr6:13591200-13601800	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr6:13591200-13607000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr6:13591200-13607000	Strong transcription	Left Ventricle	heart

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