Variant report

Variant	rs72829394
Chromosome Location	chr5:166935311-166935312
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs72819696	1.00[AMR][1000 genomes]
rs72830072	1.00[AMR][1000 genomes]
rs72830077	1.00[AMR][1000 genomes]
rs72830079	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:166929800-166943200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr5:166934600-166935600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr5:166934800-166935400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr5:166935000-166935400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:166935000-166935600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr5:166935200-166937200	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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