Variant report

Variant	rs72829884
Chromosome Location	chr17:46681084-46681085
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46680214..46681136-chr17:46698267..46698939,2	K562	blood:
2	chr17:46675371..46683952-chr17:46685648..46690575,16	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HOXB7-2	chr17:46681077-46681494	NONHSAT054448

Variant related genes	Relation type
ENSG00000260027	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2740754	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72829877	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72829881	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72829886	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833469	chr17:46491849-46709406	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
2	esv3420538	chr17:46504944-46861553	Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	369 gene(s)	inside rSNPs	diseases
3	nsv908577	chr17:46584900-46704536	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	343 gene(s)	inside rSNPs	diseases
4	nsv908578	chr17:46592413-46698710	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	335 gene(s)	inside rSNPs	diseases
5	nsv908579	chr17:46592413-46727289	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
6	nsv532113	chr17:46598247-47588570	Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	453 gene(s)	inside rSNPs	diseases
7	esv2758459	chr17:46602673-46836837	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	364 gene(s)	inside rSNPs	diseases
8	esv2758694	chr17:46602673-46836837	Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	364 gene(s)	inside rSNPs	diseases
9	nsv908580	chr17:46609103-46698710	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	335 gene(s)	inside rSNPs	diseases
10	nsv908581	chr17:46610646-46735520	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
11	nsv575480	chr17:46617019-46684929	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
12	nsv908582	chr17:46617019-46698710	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
13	nsv908583	chr17:46617019-46704536	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	342 gene(s)	inside rSNPs	diseases
14	nsv833471	chr17:46617787-46783345	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	356 gene(s)	inside rSNPs	diseases
15	nsv908584	chr17:46618926-46735520	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	348 gene(s)	inside rSNPs	diseases
16	nsv457822	chr17:46620402-46698710	Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
17	nsv575481	chr17:46620402-46698710	Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
18	nsv457823	chr17:46620402-46704536	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	342 gene(s)	inside rSNPs	diseases
19	nsv575482	chr17:46620402-46704536	Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	342 gene(s)	inside rSNPs	diseases
20	nsv457824	chr17:46625519-46693491	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
21	nsv575483	chr17:46625519-46693491	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46672400-46682600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr17:46677400-46684000	Active TSS	Fetal Kidney	kidney
3	chr17:46678800-46681600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
4	chr17:46679000-46681200	Flanking Active TSS	Adipose Nuclei	Adipose
5	chr17:46679000-46681800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
6	chr17:46679000-46682600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr17:46679200-46681400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
8	chr17:46679200-46681400	Bivalent Enhancer	Primary T cells from cord blood	blood
9	chr17:46679200-46682000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr17:46679200-46682400	Active TSS	A549	lung
11	chr17:46679200-46682600	Active TSS	Rectal Mucosa Donor 31	rectum
12	chr17:46679400-46681800	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
13	chr17:46679400-46682200	Bivalent/Poised TSS	Small Intestine	intestine
14	chr17:46679400-46682600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr17:46679600-46682000	Active TSS	Muscle Satellite Cultured Cells	--
16	chr17:46679600-46682400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
17	chr17:46679600-46682400	Active TSS	Aorta	Aorta
18	chr17:46679600-46682400	Active TSS	Sigmoid Colon	Sigmoid Colon
19	chr17:46679600-46682600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr17:46679600-46682600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr17:46679600-46682600	Active TSS	Rectal Smooth Muscle	rectum
22	chr17:46679600-46682600	Active TSS	HSMMtube	muscle
23	chr17:46679600-46682600	Active TSS	NHDF-Ad	bronchial
24	chr17:46679800-46682600	Active TSS	Hela-S3	cervix
25	chr17:46679800-46682600	Active TSS	HSMM	muscle
26	chr17:46680000-46681400	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
27	chr17:46680000-46682400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
28	chr17:46680000-46682400	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
29	chr17:46680200-46681200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr17:46680200-46682600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr17:46680200-46682600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr17:46680200-46683000	Bivalent/Poised TSS	Psoas Muscle	Psoas
33	chr17:46680400-46681200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr17:46680400-46681200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr17:46680400-46681800	Bivalent/Poised TSS	Colonic Mucosa	Colon
36	chr17:46680400-46682400	Active TSS	NHLF	lung
37	chr17:46680400-46682600	Bivalent/Poised TSS	Fetal Stomach	stomach
38	chr17:46680400-46682800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
39	chr17:46680400-46682800	Bivalent/Poised TSS	Fetal Intestine Small	intestine
40	chr17:46680800-46681200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr17:46680800-46681200	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
42	chr17:46680800-46681200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
43	chr17:46680800-46681800	Active TSS	HUVEC	blood vessel
44	chr17:46680800-46682400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr17:46680800-46682400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr17:46680800-46682400	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
47	chr17:46680800-46682800	Active TSS	Colon Smooth Muscle	Colon
48	chr17:46681000-46681200	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr17:46681000-46681200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
50	chr17:46681000-46681200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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