Variant report

Variant	rs72830018
Chromosome Location	chr6:12283453-12283454
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12281670..12285123-chr6:12286471..12289771,7	MCF-7	breast:
2	chr6:12277094..12279188-chr6:12281604..12285304,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1800785	0.96[EUR][1000 genomes]
rs72830012	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72830013	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72830014	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830586	chr6:12130076-12295334	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12275400-12289400	Weak transcription	HSMMtube	muscle
2	chr6:12276000-12287400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:12279800-12286600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:12279800-12287400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:12279800-12287600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:12280000-12286200	Weak transcription	Fetal Intestine Large	intestine
7	chr6:12280000-12289600	Weak transcription	Adipose Nuclei	Adipose
8	chr6:12280200-12288000	Weak transcription	GM12878-XiMat	blood
9	chr6:12280400-12286400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:12280600-12284800	Enhancers	A549	lung
11	chr6:12280600-12285400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr6:12281000-12285600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr6:12281200-12286400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:12281200-12286400	Weak transcription	Hela-S3	cervix
15	chr6:12281400-12286400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:12281400-12286400	Weak transcription	Osteobl	bone
17	chr6:12281400-12286600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:12281400-12286600	Weak transcription	NHEK	skin
19	chr6:12281400-12289400	Weak transcription	HSMM	muscle
20	chr6:12281600-12286400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:12281800-12286200	Weak transcription	NHDF-Ad	bronchial
22	chr6:12281800-12286800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:12282000-12286400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:12282600-12286800	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr6:12282800-12284000	Weak transcription	Aorta	Aorta
26	chr6:12282800-12286600	Weak transcription	Fetal Intestine Small	intestine
27	chr6:12282800-12287600	Weak transcription	Pancreas	Pancrea

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