Variant report

Variant	rs72831041
Chromosome Location	chr10:116371339-116371340
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr10:116371332-116371847	MCF-7	breast:	n/a	n/a
2	FOSL1	chr10:116371318-116371939	HCT-116	colon:	n/a	chr10:116371599-116371611 chr10:116371600-116371609 chr10:116371601-116371610 chr10:116371600-116371610 chr10:116371600-116371610 chr10:116371601-116371608
3	STAT3	chr10:116371270-116371645	MCF10A-Er-Src	breast:	n/a	chr10:116371600-116371609 chr10:116371434-116371442
4	NFIC	chr10:116371177-116371827	ECC-1	luminal epithelium:	n/a	n/a
5	FOSL2	chr10:116371335-116371840	A549	lung:	n/a	chr10:116371599-116371611 chr10:116371600-116371609 chr10:116371601-116371610 chr10:116371600-116371610 chr10:116371600-116371610 chr10:116371601-116371608

Variant related genes	Relation type
ABLIM1	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs72826954	1.00[AFR][1000 genomes]
rs72831052	1.00[AFR][1000 genomes]
rs72831073	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116345000-116382400	Weak transcription	HSMM	muscle
2	chr10:116354800-116378600	Weak transcription	Fetal Stomach	stomach
3	chr10:116360600-116380600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:116361400-116379000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr10:116361600-116378200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:116365000-116371400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:116365000-116372400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr10:116365000-116382400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr10:116365200-116371600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:116365200-116371800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:116365200-116373600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr10:116365400-116372400	Weak transcription	Small Intestine	intestine
13	chr10:116365400-116380600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr10:116365400-116382400	Weak transcription	Brain Hippocampus Middle	brain
15	chr10:116365600-116375000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr10:116365600-116378400	Weak transcription	Aorta	Aorta
17	chr10:116365800-116371600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:116365800-116371600	Weak transcription	Brain Anterior Caudate	brain
19	chr10:116365800-116371800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr10:116365800-116378400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:116365800-116382000	Weak transcription	Gastric	stomach
22	chr10:116366000-116371400	Weak transcription	HepG2	liver
23	chr10:116366600-116371600	Weak transcription	Esophagus	oesophagus
24	chr10:116366600-116371800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr10:116366600-116373200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr10:116367800-116371400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:116367800-116382600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:116368200-116373400	Weak transcription	Pancreas	Pancrea
29	chr10:116368600-116376400	Enhancers	Liver	Liver
30	chr10:116368600-116376400	Enhancers	Right Atrium	heart
31	chr10:116369000-116373800	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr10:116369200-116371600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr10:116369600-116373400	Enhancers	Fetal Heart	heart
34	chr10:116369600-116374200	Enhancers	Left Ventricle	heart
35	chr10:116370000-116371600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr10:116370000-116372600	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr10:116370400-116371800	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr10:116370400-116373400	Weak transcription	Psoas Muscle	Psoas
39	chr10:116370600-116371800	Enhancers	Lung	lung
40	chr10:116370600-116382600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr10:116370800-116372000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr10:116371000-116371400	Weak transcription	Right Ventricle	heart
43	chr10:116371000-116373200	Enhancers	Rectal Mucosa Donor 29	rectum
44	chr10:116371000-116376200	Enhancers	Stomach Mucosa	stomach
45	chr10:116371200-116371400	Enhancers	Colonic Mucosa	Colon
46	chr10:116371200-116371600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr10:116371200-116371800	Enhancers	HMEC	breast
48	chr10:116371200-116372000	Enhancers	Hela-S3	cervix
49	chr10:116371200-116372000	Enhancers	HSMMtube	muscle
50	chr10:116371200-116372400	Enhancers	A549	lung

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