Variant report

Variant	rs72832038
Chromosome Location	chr5:147813154-147813155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:147807122..147809317-chr5:147812616..147814487,2	MCF-7	breast:
2	chr5:147802471..147805934-chr5:147811042..147813269,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145868	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs55772018	1.00[AMR][1000 genomes]
rs72832035	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830516	chr5:147801104-147966093	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147777400-147823200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr5:147778400-147823400	Strong transcription	Placenta	Placenta
3	chr5:147778800-147822000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:147779000-147814400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:147781800-147823600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr5:147782600-147822800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr5:147784200-147823600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr5:147784400-147824600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr5:147797000-147832400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:147797600-147826400	Weak transcription	Stomach Mucosa	stomach
11	chr5:147801200-147823600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:147801800-147817800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:147804400-147822200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr5:147807000-147816400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr5:147807400-147814800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr5:147807400-147818600	Weak transcription	Psoas Muscle	Psoas
17	chr5:147807400-147819800	Weak transcription	Small Intestine	intestine
18	chr5:147807400-147826600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:147807600-147815000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr5:147807600-147816600	Weak transcription	Aorta	Aorta
21	chr5:147807600-147816600	Weak transcription	Esophagus	oesophagus
22	chr5:147807600-147816600	Weak transcription	Pancreas	Pancrea
23	chr5:147807600-147819800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr5:147807600-147823800	Weak transcription	Brain Angular Gyrus	brain
25	chr5:147807600-147824400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr5:147807600-147833600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr5:147807600-147833600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr5:147807600-147834000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr5:147807800-147813400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr5:147807800-147818600	Weak transcription	Colon Smooth Muscle	Colon
31	chr5:147808000-147813200	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr5:147808000-147813400	Weak transcription	HepG2	liver
33	chr5:147808000-147814400	Weak transcription	Spleen	Spleen
34	chr5:147808000-147814800	Weak transcription	Ovary	ovary
35	chr5:147808000-147816400	Weak transcription	Gastric	stomach
36	chr5:147808000-147817800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr5:147808000-147817800	Weak transcription	Lung	lung
38	chr5:147808000-147818200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr5:147808000-147832000	Weak transcription	Right Ventricle	heart
40	chr5:147808000-147835400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr5:147808200-147813200	Weak transcription	Fetal Brain Female	brain
42	chr5:147808200-147813400	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr5:147808200-147822200	Weak transcription	Colonic Mucosa	Colon
44	chr5:147808600-147813400	Weak transcription	Brain Substantia Nigra	brain
45	chr5:147809200-147819800	Weak transcription	HMEC	breast
46	chr5:147809200-147820600	Weak transcription	Rectal Smooth Muscle	rectum
47	chr5:147810200-147813400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr5:147810200-147818400	Strong transcription	Adipose Nuclei	Adipose
49	chr5:147810200-147822800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr5:147810200-147823000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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