Variant report

Variant	rs72832929
Chromosome Location	chr6:11371135-11371136
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72832951	1.00[AFR][1000 genomes]
rs72834780	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11357200-11371200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr6:11364600-11371200	Enhancers	HUVEC	blood vessel
3	chr6:11364600-11381200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:11365600-11374400	Weak transcription	Stomach Mucosa	stomach
5	chr6:11365600-11374800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:11367600-11372000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:11368400-11371400	Weak transcription	Fetal Intestine Small	intestine
8	chr6:11368400-11371800	Enhancers	HepG2	liver
9	chr6:11368400-11373800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:11368400-11374400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr6:11368400-11374400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr6:11368400-11374600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr6:11368800-11376800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:11369000-11371600	Strong transcription	Primary T cells from cord blood	blood
15	chr6:11369000-11380200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:11369200-11371600	Genic enhancers	Primary B cells from peripheral blood	blood
17	chr6:11369200-11374400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr6:11369200-11374600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr6:11369400-11371200	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr6:11369400-11373600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:11370000-11371200	Enhancers	Brain Cingulate Gyrus	brain
22	chr6:11370000-11372000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
23	chr6:11370200-11371200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:11370200-11371200	Enhancers	Adipose Nuclei	Adipose
25	chr6:11370200-11371200	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr6:11370200-11371200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr6:11370200-11371400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr6:11370200-11371800	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr6:11370200-11374000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr6:11370200-11374400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:11370400-11371200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:11370400-11371200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr6:11370400-11371200	Enhancers	Gastric	stomach
34	chr6:11370400-11371400	Enhancers	Pancreas	Pancrea
35	chr6:11370600-11371200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:11370600-11371200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr6:11370600-11371200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:11370600-11371200	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr6:11370600-11371200	Enhancers	Colonic Mucosa	Colon
40	chr6:11370600-11371200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
41	chr6:11370600-11371200	Enhancers	Fetal Muscle Leg	muscle
42	chr6:11370600-11371200	Enhancers	Fetal Thymus	thymus
43	chr6:11370600-11371200	Enhancers	Lung	lung
44	chr6:11370600-11371200	Enhancers	Right Atrium	heart
45	chr6:11370600-11371200	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr6:11370600-11371400	Genic enhancers	Primary T cells fromperipheralblood	blood
47	chr6:11370600-11371400	Genic enhancers	Spleen	Spleen
48	chr6:11370600-11371800	Strong transcription	Primary B cells from cord blood	blood
49	chr6:11370800-11371200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr6:11370800-11371200	Enhancers	Fetal Muscle Trunk	muscle

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