Variant report

Variant	rs72832930
Chromosome Location	chr17:37979950-37979951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:37978424..37980112-chr17:38107868..38109558,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4252612	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv1795575	chr17:37974075-38041762	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37978600-37981400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
2	chr17:37979000-37981400	ZNF genes & repeats	Fetal Thymus	thymus
3	chr17:37979200-37982400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
4	chr17:37979400-37980600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
5	chr17:37979400-37981000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
6	chr17:37979400-37982000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
7	chr17:37979400-37986600	ZNF genes & repeats	GM12878-XiMat	blood
8	chr17:37979400-37991800	Weak transcription	Gastric	stomach
9	chr17:37979600-37980600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
10	chr17:37979600-37980600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
11	chr17:37979600-37980600	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
12	chr17:37979600-37981800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
13	chr17:37979600-37981800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
14	chr17:37979600-37982000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
15	chr17:37979600-37982600	ZNF genes & repeats	Thymus	Thymus
16	chr17:37979800-37980000	ZNF genes & repeats	Brain Cingulate Gyrus	brain
17	chr17:37979800-37980000	ZNF genes & repeats	Fetal Stomach	stomach
18	chr17:37979800-37980200	ZNF genes & repeats	Primary T cells from cord blood	blood
19	chr17:37979800-37980600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
20	chr17:37979800-37980800	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr17:37979800-37980800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
22	chr17:37979800-37981000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
23	chr17:37979800-37981400	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
24	chr17:37979800-37981600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
25	chr17:37979800-37981800	ZNF genes & repeats	Spleen	Spleen
26	chr17:37979800-37982600	ZNF genes & repeats	Primary B cells from cord blood	blood

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