Variant report

Variant	rs72835423
Chromosome Location	chr2:114609978-114609979
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11678478	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12995005	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1394165	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17045861	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17567465	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4848359	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4849293	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62171767	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9941677	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs72835423	SLC35F5	cis	Thyroid	GTEx

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114596400-114621000	Weak transcription	Aorta	Aorta
2	chr2:114596600-114611600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr2:114596800-114632800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr2:114597600-114631400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr2:114601400-114612000	Weak transcription	Primary T cells from cord blood	blood
6	chr2:114602800-114626000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr2:114603800-114616000	Weak transcription	Spleen	Spleen
8	chr2:114603800-114631200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr2:114605200-114610400	Weak transcription	Primary B cells from cord blood	blood
10	chr2:114605400-114616000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr2:114606200-114621800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr2:114606600-114612400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:114607000-114616200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:114607200-114612400	Weak transcription	GM12878-XiMat	blood
15	chr2:114607200-114615200	Weak transcription	Osteobl	bone
16	chr2:114607200-114615800	Weak transcription	HMEC	breast
17	chr2:114607600-114610200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr2:114608200-114610000	Enhancers	Ovary	ovary
19	chr2:114608400-114612400	Weak transcription	Thymus	Thymus
20	chr2:114608600-114612200	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr2:114608600-114612400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr2:114608600-114615200	Weak transcription	Pancreas	Pancrea
23	chr2:114609400-114612200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr2:114609600-114612400	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr2:114609600-114614600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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