Variant report

Variant	rs72836504
Chromosome Location	chr5:167704145-167704146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17551008	1.00[AMR][1000 genomes]
rs72835088	0.85[AMR][1000 genomes]
rs72835096	1.00[AMR][1000 genomes]
rs72835098	1.00[AMR][1000 genomes]
rs72835099	1.00[AMR][1000 genomes]
rs72838315	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534607	chr5:167661667-168454396	Active TSS Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv5117	chr5:167666701-167711857	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv949154	chr5:167691208-168323234	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167696800-167704400	Weak transcription	Gastric	stomach
2	chr5:167698200-167704200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr5:167702400-167704400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr5:167702600-167704400	Enhancers	Fetal Brain Male	brain
5	chr5:167702800-167704600	Enhancers	A549	lung
6	chr5:167703000-167709200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr5:167703400-167709200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:167703600-167709000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:167703800-167704200	Weak transcription	Fetal Brain Female	brain
10	chr5:167703800-167704400	Enhancers	Fetal Intestine Small	intestine
11	chr5:167703800-167704400	Bivalent Enhancer	HepG2	liver
12	chr5:167703800-167705200	Enhancers	Fetal Kidney	kidney
13	chr5:167704000-167704400	Enhancers	Fetal Intestine Large	intestine
14	chr5:167704000-167704800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr5:167704000-167704800	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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