Variant report

Variant	rs7283839
Chromosome Location	chr21:17198170-17198171
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:17102159..17104767-chr21:17197837..17199480,2	K562	blood:
2	chr21:17101236..17104015-chr21:17196099..17198458,3	MCF-7	breast:
3	chr21:17099652..17105374-chr21:17196149..17200245,6	MCF-7	breast:
4	chr21:17101218..17103659-chr21:17197837..17200378,2	K562	blood:

Variant related genes	Relation type
ENSG00000155313	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11909953	0.86[AFR][1000 genomes]
rs2026853	0.85[AFR][1000 genomes]
rs2297248	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2823500	0.80[AFR][1000 genomes]
rs2823502	0.83[AFR][1000 genomes]
rs2823503	0.83[AFR][1000 genomes]
rs2823508	0.88[EUR][1000 genomes]
rs28553297	0.81[AFR][1000 genomes]
rs28714100	0.90[EUR][1000 genomes]
rs8132755	0.81[AFR][1000 genomes]
rs9305753	0.82[EUR][1000 genomes]
rs9653733	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834050	chr21:17146090-17348951	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1063035	chr21:17154222-17224344	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17155200-17199200	Weak transcription	Right Ventricle	heart
2	chr21:17155200-17203800	Weak transcription	Colon Smooth Muscle	Colon
3	chr21:17155200-17209800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr21:17155200-17252800	Weak transcription	Fetal Brain Male	brain
5	chr21:17176000-17198200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr21:17177200-17208800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr21:17178400-17248200	Weak transcription	Esophagus	oesophagus
8	chr21:17178400-17252800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr21:17178800-17211400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr21:17180800-17199200	Weak transcription	HSMMtube	muscle
11	chr21:17182400-17227800	Weak transcription	Psoas Muscle	Psoas
12	chr21:17184000-17203800	Weak transcription	Brain Hippocampus Middle	brain
13	chr21:17184000-17209800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr21:17186200-17204200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr21:17187400-17208800	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr21:17187800-17203600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr21:17188000-17199200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr21:17188000-17199200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr21:17188000-17203800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr21:17188000-17208800	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr21:17188000-17214000	Weak transcription	Gastric	stomach
22	chr21:17188000-17229400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr21:17188000-17240200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr21:17188200-17203800	Weak transcription	Fetal Lung	lung
25	chr21:17188200-17213400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr21:17188200-17246800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr21:17188400-17198400	Weak transcription	A549	lung
28	chr21:17188400-17206600	Weak transcription	Stomach Mucosa	stomach
29	chr21:17188400-17247200	Weak transcription	Ovary	ovary
30	chr21:17188400-17253200	Weak transcription	Fetal Brain Female	brain
31	chr21:17188600-17199200	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr21:17188600-17210000	Weak transcription	Aorta	Aorta
33	chr21:17188600-17210400	Weak transcription	Fetal Intestine Small	intestine
34	chr21:17188600-17213400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr21:17188800-17206400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr21:17188800-17247000	Weak transcription	Brain Germinal Matrix	brain
37	chr21:17188800-17252600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr21:17189000-17202400	Weak transcription	HepG2	liver
39	chr21:17189000-17203000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr21:17190200-17199200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr21:17190200-17199200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr21:17190200-17203800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr21:17190200-17245400	Weak transcription	Lung	lung
44	chr21:17190200-17247200	Weak transcription	Pancreas	Pancrea
45	chr21:17190400-17203800	Weak transcription	Brain Angular Gyrus	brain
46	chr21:17190400-17247200	Weak transcription	Spleen	Spleen
47	chr21:17190400-17247400	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr21:17190600-17200800	Weak transcription	Fetal Stomach	stomach
49	chr21:17190600-17203600	Weak transcription	Thymus	Thymus
50	chr21:17190600-17203800	Weak transcription	Brain Anterior Caudate	brain

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