The 2.0 version of rSNPBase

Variant report

Variant rs72840197
Chromosome Location chr6:26363380-26363381
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:26352600-26364200 Weak transcription NHEK skin
2 chr6:26352800-26364000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
3 chr6:26353000-26364200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr6:26355400-26364200 Weak transcription Fetal Intestine Small intestine
5 chr6:26356200-26365400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
6 chr6:26356400-26364400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
7 chr6:26359000-26364600 Enhancers Fetal Thymus thymus
8 chr6:26359800-26364200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
9 chr6:26360200-26364200 Weak transcription Fetal Muscle Trunk muscle
10 chr6:26360600-26364400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
11 chr6:26360800-26364200 Enhancers Primary T helper cells fromperipheralblood blood
12 chr6:26361200-26364200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
13 chr6:26361400-26364200 Weak transcription Primary hematopoietic stem cells blood
14 chr6:26361400-26364200 Enhancers Primary T helper cells PMA-I stimulated --
15 chr6:26361400-26364200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
16 chr6:26361600-26364200 Weak transcription Primary B cells from cord blood blood
17 chr6:26361600-26364200 Weak transcription Primary hematopoietic stem cells short term culture blood
18 chr6:26361600-26364200 Enhancers Primary T regulatory cells fromperipheralblood blood
19 chr6:26361800-26363800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr6:26361800-26364200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
21 chr6:26362000-26363600 Weak transcription Thymus Thymus
22 chr6:26362000-26364000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
23 chr6:26362000-26364200 Weak transcription Primary B cells from peripheral blood blood
24 chr6:26362000-26364200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
25 chr6:26362000-26364200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
26 chr6:26362000-26364200 Weak transcription Duodenum Mucosa Duodenum
27 chr6:26362000-26364400 Enhancers Primary T helper naive cells from peripheral blood blood
28 chr6:26362200-26363400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
29 chr6:26362200-26364000 Weak transcription Primary T killer naive cells fromperipheralblood blood
30 chr6:26362200-26364200 Weak transcription Primary T helper naive cells fromperipheralblood blood
31 chr6:26362200-26364200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
32 chr6:26362400-26363600 Weak transcription Primary T cells fromperipheralblood blood
33 chr6:26362400-26364200 Weak transcription GM12878-XiMat blood
34 chr6:26362400-26364200 Enhancers K562 blood
35 chr6:26362600-26364200 Weak transcription Fetal Adrenal Gland Adrenal Gland
36 chr6:26362600-26364400 Enhancers A549 lung
37 chr6:26362800-26363600 Weak transcription Primary T killer memory cells from peripheral blood blood
38 chr6:26362800-26363800 Weak transcription Primary T cells from cord blood blood
39 chr6:26362800-26364200 Enhancers HepG2 liver
40 chr6:26363000-26364400 Enhancers Monocytes-CD14+_RO01746 blood
41 chr6:26363000-26364600 Enhancers Primary monocytes fromperipheralblood blood
42 chr6:26363200-26364200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015