Variant report

Variant	rs72843759
Chromosome Location	chr17:59990609-59990610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:59984827..59990978-chr17:60003230..60006260,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108506	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1045196	1.00[AFR][1000 genomes]
rs10512491	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12601229	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12601523	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12603627	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12603878	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12937188	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16945670	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16945724	1.00[AFR][1000 genomes]
rs16945762	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs16945785	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1809077	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2378946	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72843732	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72843737	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72843738	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72843739	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72843746	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72843758	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72843762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72843767	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72843769	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72843770	1.00[AFR][1000 genomes]
rs72843771	1.00[AFR][1000 genomes]
rs72843772	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72843775	0.84[EUR][1000 genomes]
rs72843778	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72843782	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72843785	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72843788	0.82[EUR][1000 genomes]
rs72843791	0.82[AFR][1000 genomes]
rs753765	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8081200	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9910451	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv916786	chr17:59890834-60103687	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59941400-60004400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:59941400-60004400	Weak transcription	Aorta	Aorta
3	chr17:59941400-60004400	Weak transcription	Pancreas	Pancrea
4	chr17:59941600-60003600	Weak transcription	Stomach Mucosa	stomach
5	chr17:59941600-60004400	Weak transcription	Colonic Mucosa	Colon
6	chr17:59942600-60002800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr17:59951400-59992200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr17:59954400-60003800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr17:59959000-59996800	Weak transcription	Gastric	stomach
10	chr17:59959600-60003600	Weak transcription	Fetal Heart	heart
11	chr17:59966000-60004200	Weak transcription	Psoas Muscle	Psoas
12	chr17:59966200-59998000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr17:59974200-59993000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr17:59975400-59991800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr17:59975400-60004600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr17:59975600-59991000	Strong transcription	Fetal Stomach	stomach
17	chr17:59976200-59992400	Strong transcription	HepG2	liver
18	chr17:59978600-60004400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr17:59980200-60003600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr17:59982000-59992400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr17:59982600-60001400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr17:59982600-60003600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr17:59983000-59997000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr17:59983200-59992200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr17:59983600-60004600	Weak transcription	Spleen	Spleen
26	chr17:59984200-60003400	Weak transcription	HSMMtube	muscle
27	chr17:59985000-60004400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr17:59987000-59991800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr17:59987200-59991600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr17:59987800-59991800	Weak transcription	Right Atrium	heart
31	chr17:59987800-59994400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr17:59987800-59994600	Weak transcription	Fetal Brain Male	brain
33	chr17:59987800-59995800	Weak transcription	Small Intestine	intestine
34	chr17:59987800-60002600	Weak transcription	NHEK	skin
35	chr17:59988000-59991600	Weak transcription	Fetal Intestine Small	intestine
36	chr17:59989000-59994800	Weak transcription	Ovary	ovary
37	chr17:59989000-59996600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr17:59989000-59996800	Weak transcription	Esophagus	oesophagus
39	chr17:59989000-60001600	Weak transcription	Brain Germinal Matrix	brain
40	chr17:59989200-59995400	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr17:59989200-59996600	Weak transcription	HSMM	muscle
42	chr17:59989200-59998000	Weak transcription	Fetal Kidney	kidney
43	chr17:59989200-59998600	Weak transcription	HMEC	breast
44	chr17:59989200-60001400	Weak transcription	Brain Cingulate Gyrus	brain
45	chr17:59989200-60003400	Weak transcription	Colon Smooth Muscle	Colon
46	chr17:59989400-59994200	Weak transcription	Primary B cells from cord blood	blood
47	chr17:59989400-59994400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr17:59989400-59994400	Weak transcription	NH-A	brain
49	chr17:59989400-59994600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr17:59989400-59994600	Weak transcription	Thymus	Thymus

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