The 2.0 version of rSNPBase

Variant report

Variant rs72843872
Chromosome Location chr2:85820027-85820028
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:85812600-85821200 Weak transcription Fetal Heart heart
2 chr2:85813200-85821400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
3 chr2:85813600-85821400 Weak transcription Fetal Intestine Large intestine
4 chr2:85814000-85821600 Weak transcription Small Intestine intestine
5 chr2:85815000-85821400 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr2:85815000-85821600 Weak transcription Primary T regulatory cells fromperipheralblood blood
7 chr2:85815200-85821600 Weak transcription Primary T killer memory cells from peripheral blood blood
8 chr2:85815400-85821200 Weak transcription Dnd41 blood
9 chr2:85815400-85821400 Weak transcription Primary T cells fromperipheralblood blood
10 chr2:85815400-85821400 Weak transcription GM12878-XiMat blood
11 chr2:85815600-85821400 Weak transcription Primary T helper naive cells fromperipheralblood blood
12 chr2:85815600-85821400 Weak transcription Primary T killer naive cells fromperipheralblood blood
13 chr2:85815600-85821400 Weak transcription Hela-S3 cervix
14 chr2:85815800-85821400 Weak transcription Primary T helper cells PMA-I stimulated --
15 chr2:85815800-85821600 Weak transcription Primary B cells from peripheral blood blood
16 chr2:85816000-85820200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
17 chr2:85816000-85821400 Weak transcription Fetal Kidney kidney
18 chr2:85816000-85821400 Weak transcription Thymus Thymus
19 chr2:85816200-85821400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
20 chr2:85817600-85821600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
21 chr2:85817800-85820200 Enhancers HepG2 liver
22 chr2:85818200-85821400 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr2:85818200-85821400 Weak transcription NHEK skin
24 chr2:85818200-85821600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr2:85818200-85821600 Enhancers Pancreas Pancrea
26 chr2:85818400-85820200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
27 chr2:85818400-85821200 Weak transcription Liver Liver
28 chr2:85818400-85821400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr2:85818400-85821400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
30 chr2:85818400-85821400 Weak transcription K562 blood
31 chr2:85818400-85821600 Weak transcription Cortex derived primary cultured neurospheres brain
32 chr2:85818400-85821600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr2:85818400-85821600 Weak transcription Rectal Mucosa Donor 29 rectum
34 chr2:85818400-85821600 Weak transcription HMEC breast
35 chr2:85818400-85821800 Weak transcription Aorta Aorta
36 chr2:85818600-85821200 Weak transcription Breast Myoepithelial Primary Cells Breast
37 chr2:85818600-85821200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr2:85818600-85821400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
39 chr2:85818600-85821400 Weak transcription Rectal Smooth Muscle rectum
40 chr2:85818800-85820200 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
41 chr2:85818800-85821200 Weak transcription Psoas Muscle Psoas
42 chr2:85818800-85821400 Weak transcription Primary B cells from cord blood blood
43 chr2:85818800-85821400 Weak transcription Brain Inferior Temporal Lobe brain
44 chr2:85818800-85821400 Weak transcription Duodenum Mucosa Duodenum
45 chr2:85818800-85821400 Weak transcription HUVEC blood vessel
46 chr2:85818800-85821600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr2:85818800-85821800 Genic enhancers HSMM muscle
48 chr2:85819000-85820200 Weak transcription Ovary ovary
49 chr2:85819000-85820200 Weak transcription Right Ventricle heart
50 chr2:85819000-85820600 Enhancers Adipose Nuclei Adipose

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Last update: Aug 31, 2015