Variant report

Variant	rs72845050
Chromosome Location	chr6:27610070-27610071
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27598579..27600945-chr6:27608405..27610301,2	K562	blood:
2	chr6:27608258..27610952-chr6:27614931..27616951,2	K562	blood:
3	chr6:27599112..27600945-chr6:27608260..27610301,2	K562	blood:
4	chr6:27439118..27441039-chr6:27609701..27612516,2	K562	blood:

Variant related genes	Relation type
ENSG00000096654	Chromatin interaction
ENSG00000238648	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10456051	0.84[AMR][1000 genomes]
rs12189640	0.84[AMR][1000 genomes]
rs12191649	0.84[AMR][1000 genomes]
rs12193557	0.84[AMR][1000 genomes]
rs12194341	0.84[AMR][1000 genomes]
rs12195783	0.84[AMR][1000 genomes]
rs12199806	0.84[AMR][1000 genomes]
rs12204953	0.84[AMR][1000 genomes]
rs12205044	0.84[AMR][1000 genomes]
rs12209174	0.84[AMR][1000 genomes]
rs12209905	0.84[AMR][1000 genomes]
rs12211931	0.84[AMR][1000 genomes]
rs12212632	0.84[AMR][1000 genomes]
rs12213471	0.84[AMR][1000 genomes]
rs12215289	0.84[AMR][1000 genomes]
rs12215353	0.84[AMR][1000 genomes]
rs12215386	0.84[AMR][1000 genomes]
rs56099947	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57075114	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60888769	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62617138	0.84[AMR][1000 genomes]
rs71546544	1.00[AMR][1000 genomes]
rs72841397	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72841398	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72841399	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72841400	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72843191	0.84[AMR][1000 genomes]
rs72845006	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72845008	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72845011	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72845012	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72845025	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72845027	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72845028	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72845030	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72845031	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72845033	0.86[EUR][1000 genomes]
rs72845042	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72845044	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72845051	0.98[EUR][1000 genomes]
rs72845058	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72845060	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72845062	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72845064	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72845068	1.00[AFR][1000 genomes]
rs72845232	0.84[AMR][1000 genomes]
rs72845896	1.00[AFR][1000 genomes]
rs72847322	1.00[AFR][1000 genomes]
rs72847323	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv1023673	chr6:27570731-27688782	Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
5	nsv1031337	chr6:27596676-27734884	Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links