Variant report

Variant	rs72845403
Chromosome Location	chr17:60156936-60156937
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:60002354..60005075-chr17:60156780..60158855,2	MCF-7	breast:
2	chr17:60141394..60143169-chr17:60155265..60157168,2	K562	blood:
3	chr17:60142243..60144669-chr17:60156001..60158441,2	MCF-7	breast:
4	chr17:60141758..60143468-chr17:60156857..60159047,2	MCF-7	breast:
5	chr17:60149143..60152919-chr17:60156555..60160538,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108510	Chromatin interaction
ENSG00000108506	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10512491	0.89[AMR][1000 genomes]
rs16945762	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16945785	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16945823	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4280312	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66685667	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72843769	0.80[EUR][1000 genomes]
rs72843772	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72843775	0.89[AMR][1000 genomes]
rs72843778	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72843782	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72843785	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72843788	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72843791	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72843793	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72843797	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72843801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845406	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845408	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72845420	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72845434	0.89[AMR][1000 genomes]
rs72845437	0.89[AMR][1000 genomes]
rs9910451	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062816	chr17:60074670-60470465	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	esv2753884	chr17:60077852-60190630	Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv2755037	chr17:60086508-60386211	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv3415630	chr17:60124819-60401635	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:60155800-60167600	Weak transcription	Pancreas	Pancrea
2	chr17:60156600-60157000	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links