Variant report

Variant	rs72845852
Chromosome Location	chr6:3991934-3991935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:3991492..3994091-chr6:3995382..3997946,2	K562	blood:
2	chr6:3990717..3994898-chr6:4017557..4021818,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230648	Chromatin interaction
ENSG00000272248	Chromatin interaction
ENSG00000112739	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10485172	1.00[ASN][1000 genomes]
rs12110567	1.00[ASN][1000 genomes]
rs17137450	1.00[ASN][1000 genomes]
rs17137491	0.81[EUR][1000 genomes]
rs17733807	1.00[ASN][1000 genomes]
rs2783061	0.83[ASN][1000 genomes]
rs35085092	1.00[ASN][1000 genomes]
rs41301865	1.00[ASN][1000 genomes]
rs67642293	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs736859	1.00[ASN][1000 genomes]
rs7755418	0.81[EUR][1000 genomes]
rs9502110	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9503890	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532020	chr6:3417520-4140257	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1022968	chr6:3862744-4272502	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv538106	chr6:3862744-4272502	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv1800199	chr6:3986611-4014872	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:3979000-4003200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr6:3980600-4003600	Weak transcription	Primary B cells from cord blood	blood
3	chr6:3985400-4011000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:3987800-3993200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:3987800-3997200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:3987800-3998800	Weak transcription	Primary T cells from cord blood	blood
7	chr6:3988200-3997000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:3990800-3992000	Enhancers	Fetal Intestine Small	intestine
9	chr6:3990800-3993200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:3991000-3992200	Enhancers	Stomach Mucosa	stomach
11	chr6:3991000-3992800	Enhancers	Fetal Intestine Large	intestine
12	chr6:3991200-3993200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:3991200-4003800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr6:3991200-4008400	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr6:3991200-4010400	Weak transcription	K562	blood
16	chr6:3991200-4011000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:3991200-4012200	Weak transcription	Left Ventricle	heart
18	chr6:3991400-3992000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr6:3991400-3992200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:3991400-3992200	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr6:3991400-3992200	Enhancers	Osteobl	bone
22	chr6:3991400-3992400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:3991400-3993200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:3991400-3995000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr6:3991400-3995200	Weak transcription	Right Atrium	heart
26	chr6:3991400-3996800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:3991400-3996800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr6:3991400-3996800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:3991400-3996800	Weak transcription	Fetal Brain Male	brain
30	chr6:3991400-3997000	Weak transcription	Psoas Muscle	Psoas
31	chr6:3991400-3997400	Weak transcription	Brain Anterior Caudate	brain
32	chr6:3991400-4003600	Weak transcription	Primary B cells from peripheral blood	blood
33	chr6:3991400-4011000	Weak transcription	Lung	lung
34	chr6:3991400-4016800	Weak transcription	Fetal Muscle Trunk	muscle
35	chr6:3991600-3992600	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr6:3991600-3992800	Enhancers	Placenta	Placenta
37	chr6:3991600-3993200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr6:3991600-3996800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:3991600-3996800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr6:3991600-3996800	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr6:3991600-3996800	Weak transcription	HSMMtube	muscle
42	chr6:3991600-3997000	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr6:3991600-3997000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr6:3991600-3997000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr6:3991600-3997200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr6:3991600-4000200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr6:3991600-4001800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr6:3991600-4003000	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr6:3991600-4003600	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr6:3991600-4007000	Weak transcription	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links