Variant report

Variant	rs72847140
Chromosome Location	chr17:63112178-63112179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:63104937..63106962-chr17:63110869..63114736,3	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12449947	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56391935	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066765	chr17:62649313-63124303	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63097800-63112200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr17:63103000-63118800	Weak transcription	Aorta	Aorta
3	chr17:63103200-63112400	Weak transcription	Ovary	ovary
4	chr17:63103200-63118400	Weak transcription	Left Ventricle	heart
5	chr17:63103200-63118800	Weak transcription	Right Atrium	heart
6	chr17:63103400-63118600	Weak transcription	Brain Anterior Caudate	brain
7	chr17:63103400-63118600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr17:63103800-63118600	Weak transcription	Psoas Muscle	Psoas
9	chr17:63104000-63118600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr17:63104000-63118800	Weak transcription	Colon Smooth Muscle	Colon
11	chr17:63104200-63118600	Weak transcription	Brain Hippocampus Middle	brain
12	chr17:63104400-63118600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr17:63106200-63119000	Weak transcription	Fetal Lung	lung
14	chr17:63106400-63118600	Weak transcription	Adipose Nuclei	Adipose
15	chr17:63107800-63112200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr17:63108000-63118600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr17:63108400-63112200	Weak transcription	K562	blood
18	chr17:63111400-63112400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr17:63111400-63112400	Enhancers	Fetal Brain Male	brain
20	chr17:63111400-63113800	Enhancers	Primary hematopoietic stem cells	blood
21	chr17:63111400-63114000	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr17:63111400-63114000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr17:63111600-63112400	Enhancers	Primary T cells fromperipheralblood	blood
24	chr17:63112000-63112200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr17:63112000-63112200	Enhancers	Placenta	Placenta
26	chr17:63112000-63112400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr17:63112000-63112400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr17:63112000-63112400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr17:63112000-63112400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr17:63112000-63112400	Enhancers	Fetal Thymus	thymus
31	chr17:63112000-63112400	Bivalent Enhancer	HUVEC	blood vessel

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