Variant report

Variant	rs72849213
Chromosome Location	chr6:28185922-28185923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28184931..28189194-chr6:28190077..28194573,12	MCF-7	breast:
2	chr6:28184339..28187958-chr6:28190844..28194750,7	MCF-7	breast:
3	chr6:28182735..28195387-chr6:28315960..28325841,32	K562	blood:
4	chr6:28108272..28111912-chr6:28184259..28187979,3	MCF-7	breast:
5	chr6:28185564..28187470-chr6:28218621..28220714,2	MCF-7	breast:
6	chr6:27805809..27807448-chr6:28184413..28187037,2	MCF-7	breast:
7	chr6:28184789..28191313-chr6:28230652..28235913,7	K562	blood:
8	chr6:28183629..28195178-chr6:28316250..28325659,29	K562	blood:
9	chr6:28100317..28107200-chr6:28184436..28191088,8	MCF-7	breast:
10	chr6:28104139..28106070-chr6:28185714..28187223,2	MCF-7	breast:
11	chr6:28102723..28113786-chr6:28183725..28194756,41	K562	blood:
12	chr6:28184805..28186411-chr6:28255755..28258597,2	K562	blood:
13	chr6:28184981..28190782-chr6:28297491..28307222,23	K562	blood:
14	chr6:28184440..28186086-chr6:28227732..28230449,2	K562	blood:
15	chr6:28103775..28113920-chr6:28177995..28190115,32	K562	blood:
16	chr6:28182366..28191375-chr6:28300021..28306741,17	K562	blood:

No data

Variant related genes	Relation type
ENSG00000269293	Chromatin interaction
ENSG00000235109	Chromatin interaction
ENSG00000261839	Chromatin interaction
ENSG00000187626	Chromatin interaction
ENSG00000137185	Chromatin interaction
ENSG00000198315	Chromatin interaction
ENSG00000184348	Chromatin interaction
ENSG00000233822	Chromatin interaction
ENSG00000197062	Chromatin interaction
ENSG00000189298	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
2	nsv527115	chr6:28185726-28186554	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28180800-28186400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:28181400-28186000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:28181400-28186000	Weak transcription	HSMM	muscle
4	chr6:28182800-28186000	Enhancers	Placenta	Placenta
5	chr6:28183600-28186000	Weak transcription	HMEC	breast
6	chr6:28183600-28186200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:28184000-28186000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:28184000-28186000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:28184600-28186000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr6:28184600-28186600	Enhancers	Spleen	Spleen
11	chr6:28184800-28186000	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr6:28184800-28186200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:28184800-28186400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr6:28185000-28186000	Weak transcription	Gastric	stomach
15	chr6:28185000-28186000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr6:28185200-28186000	Enhancers	Fetal Heart	heart
17	chr6:28185200-28186000	Weak transcription	Right Atrium	heart
18	chr6:28185200-28186400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr6:28185400-28186000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:28185400-28186000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
21	chr6:28185400-28186000	Enhancers	Left Ventricle	heart
22	chr6:28185400-28186200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:28185400-28186200	Flanking Active TSS	K562	blood
24	chr6:28185400-28186400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:28185400-28186400	ZNF genes & repeats	Fetal Intestine Small	intestine
26	chr6:28185600-28186000	Enhancers	GM12878-XiMat	blood
27	chr6:28185600-28186200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:28185600-28186400	Flanking Active TSS	Hela-S3	cervix
29	chr6:28185600-28186600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:28185600-28187000	Active TSS	H9 Cell Line	embryonic stem cell
31	chr6:28185600-28187400	Active TSS	Stomach Smooth Muscle	stomach
32	chr6:28185800-28186000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:28185800-28186000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
34	chr6:28185800-28186000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
35	chr6:28185800-28186000	Bivalent/Poised TSS	Primary T killer memory cells from peripheral blood	blood
36	chr6:28185800-28186000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:28185800-28186000	Enhancers	Adipose Nuclei	Adipose
38	chr6:28185800-28186000	Bivalent Enhancer	Brain Anterior Caudate	brain
39	chr6:28185800-28186000	Bivalent Enhancer	Brain Cingulate Gyrus	brain
40	chr6:28185800-28186000	Active TSS	Fetal Lung	lung
41	chr6:28185800-28186000	Active TSS	Rectal Mucosa Donor 31	rectum
42	chr6:28185800-28186000	Active TSS	A549	lung
43	chr6:28185800-28186000	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr6:28185800-28186200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:28185800-28186200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr6:28185800-28186200	Active TSS	Liver	Liver
47	chr6:28185800-28186200	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr6:28185800-28186200	Enhancers	Lung	lung
49	chr6:28185800-28186200	Enhancers	Pancreas	Pancrea
50	chr6:28185800-28186200	Flanking Active TSS	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links