Variant report

Variant	rs72851596
Chromosome Location	chr11:8925611-8925612
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8922687..8924837-chr11:8924953..8926686,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1025438	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12288224	0.81[EUR][1000 genomes]
rs12798311	0.94[ASN][1000 genomes]
rs1347016	0.88[ASN][1000 genomes]
rs2016844	0.84[ASN][1000 genomes]
rs2056903	0.92[ASN][1000 genomes]
rs2116510	0.88[ASN][1000 genomes]
rs2116511	0.88[ASN][1000 genomes]
rs2246878	0.93[ASN][1000 genomes]
rs2247038	0.93[ASN][1000 genomes]
rs2316541	0.90[ASN][1000 genomes]
rs2568069	0.88[ASN][1000 genomes]
rs2568074	0.93[ASN][1000 genomes]
rs2568075	0.93[ASN][1000 genomes]
rs2568077	0.93[ASN][1000 genomes]
rs2568079	0.92[ASN][1000 genomes]
rs2568081	0.90[ASN][1000 genomes]
rs2568086	0.88[ASN][1000 genomes]
rs2568087	0.88[ASN][1000 genomes]
rs2568088	0.82[ASN][1000 genomes]
rs2653590	0.88[ASN][1000 genomes]
rs2653597	0.83[ASN][1000 genomes]
rs2653601	0.93[ASN][1000 genomes]
rs2653604	0.88[ASN][1000 genomes]
rs2653611	0.92[ASN][1000 genomes]
rs2742486	0.88[ASN][1000 genomes]
rs2742487	0.88[ASN][1000 genomes]
rs2742488	0.88[ASN][1000 genomes]
rs2742489	0.82[ASN][1000 genomes]
rs2742491	0.88[ASN][1000 genomes]
rs2742493	0.88[ASN][1000 genomes]
rs2742495	0.89[ASN][1000 genomes]
rs2742496	0.90[ASN][1000 genomes]
rs2742497	0.92[ASN][1000 genomes]
rs2742504	0.92[ASN][1000 genomes]
rs2742505	0.92[ASN][1000 genomes]
rs2742512	0.93[ASN][1000 genomes]
rs2742513	0.93[ASN][1000 genomes]
rs2742514	0.93[ASN][1000 genomes]
rs2742519	0.93[ASN][1000 genomes]
rs72852783	0.87[EUR][1000 genomes]
rs72852790	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72853712	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7940895	0.84[ASN][1000 genomes]
rs909464	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv435923	chr11:8839325-9000602	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv832062	chr11:8849295-9009472	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8918000-8926000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:8925200-8927400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:8925600-8925800	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links