Variant report

Variant	rs72852702
Chromosome Location	chr6:38456959-38456960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13194484	1.00[AFR][1000 genomes]
rs2748160	1.00[AFR][1000 genomes]
rs60227349	1.00[AFR][1000 genomes]
rs62396374	1.00[AFR][1000 genomes]
rs62396375	1.00[AFR][1000 genomes]
rs62396376	1.00[AFR][1000 genomes]
rs62396378	1.00[AFR][1000 genomes]
rs62396381	1.00[AFR][1000 genomes]
rs62396382	1.00[AFR][1000 genomes]
rs62399161	1.00[AFR][1000 genomes]
rs72855194	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv885820	chr6:38166511-38468887	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38444600-38496200	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr6:38449800-38461600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:38450000-38461000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:38450600-38469800	Weak transcription	HSMMtube	muscle
5	chr6:38450800-38458000	Weak transcription	Fetal Lung	lung
6	chr6:38450800-38461600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:38451000-38461000	Weak transcription	Fetal Brain Male	brain
8	chr6:38451600-38471000	Weak transcription	Psoas Muscle	Psoas
9	chr6:38452400-38496600	Weak transcription	Primary B cells from cord blood	blood
10	chr6:38453400-38457800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:38453400-38458400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr6:38454000-38461000	Weak transcription	GM12878-XiMat	blood
13	chr6:38454400-38486400	Weak transcription	Primary T cells from cord blood	blood
14	chr6:38455600-38461200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:38456800-38457200	Enhancers	Fetal Muscle Leg	muscle
16	chr6:38456800-38457600	Enhancers	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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