Variant report

Variant	rs72852705
Chromosome Location	chr6:38821418-38821419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38819628..38821796-chr6:38823200..38825127,2	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs12524328	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12524938	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12526772	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12526788	0.90[EUR][1000 genomes]
rs12527204	0.91[EUR][1000 genomes]
rs12527876	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12528676	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1564376	0.87[EUR][1000 genomes]
rs17624428	0.88[EUR][1000 genomes]
rs2038199	0.89[EUR][1000 genomes]
rs2038200	0.89[EUR][1000 genomes]
rs2038201	0.89[EUR][1000 genomes]
rs2038202	0.89[EUR][1000 genomes]
rs2038203	0.89[EUR][1000 genomes]
rs2179710	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2395705	0.90[EUR][1000 genomes]
rs55891540	0.91[EUR][1000 genomes]
rs55918123	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55939633	0.89[EUR][1000 genomes]
rs56247993	0.89[EUR][1000 genomes]
rs56315820	0.89[EUR][1000 genomes]
rs58350338	0.87[EUR][1000 genomes]
rs58620448	0.89[EUR][1000 genomes]
rs59144458	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61748600	0.85[EUR][1000 genomes]
rs61748601	0.89[EUR][1000 genomes]
rs72849108	0.85[EUR][1000 genomes]
rs72849135	0.85[EUR][1000 genomes]
rs72849149	0.85[EUR][1000 genomes]
rs72849152	0.87[EUR][1000 genomes]
rs72849154	0.87[EUR][1000 genomes]
rs72849155	0.87[EUR][1000 genomes]
rs72849157	0.83[EUR][1000 genomes]
rs72849158	0.87[EUR][1000 genomes]
rs72849159	0.87[EUR][1000 genomes]
rs72849162	0.87[EUR][1000 genomes]
rs72849167	0.87[EUR][1000 genomes]
rs72849168	0.87[EUR][1000 genomes]
rs72849172	0.89[EUR][1000 genomes]
rs72849173	0.89[EUR][1000 genomes]
rs72849178	0.89[EUR][1000 genomes]
rs72849179	0.89[EUR][1000 genomes]
rs72849181	0.89[EUR][1000 genomes]
rs72849182	0.89[EUR][1000 genomes]
rs72849187	0.89[EUR][1000 genomes]
rs72849189	0.89[EUR][1000 genomes]
rs72849190	0.89[EUR][1000 genomes]
rs72849201	0.89[EUR][1000 genomes]
rs72849924	0.90[EUR][1000 genomes]
rs72849933	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72849943	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72849984	0.91[EUR][1000 genomes]
rs72851507	0.83[EUR][1000 genomes]
rs72851511	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72851512	0.91[EUR][1000 genomes]
rs72851533	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72851568	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72851599	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72852707	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72852712	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72852719	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72852721	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7749015	0.87[EUR][1000 genomes]
rs7773138	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv830643	chr6:38726675-38905589	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	esv3385303	chr6:38821376-38821837	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38766800-38824400	Weak transcription	K562	blood
2	chr6:38821000-38821600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:38821000-38821600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:38821000-38821600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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