Variant report

Variant	rs728547
Chromosome Location	chr1:75164678-75164679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CRYZ-1	chr1:75164453-75165017	ENSG00000272864.1

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10518473	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10789400	1.00[JPT][hapmap]
rs663246	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011745	chr1:74730942-75477618	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv535003	chr1:74730942-75477618	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv830259	chr1:75089177-75241062	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv461995	chr1:75133142-75166623	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv546578	chr1:75133142-75166623	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv2762153	chr1:75142205-75171211	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv871152	chr1:75152186-75197533	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
8	esv1851105	chr1:75152186-75302921	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75141800-75179600	Weak transcription	Aorta	Aorta
2	chr1:75156000-75167600	Weak transcription	Liver	Liver
3	chr1:75156000-75183400	Weak transcription	Fetal Heart	heart
4	chr1:75156200-75167800	Weak transcription	Fetal Lung	lung
5	chr1:75156200-75168000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:75156200-75168200	Weak transcription	Ovary	ovary
7	chr1:75156200-75169200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:75156200-75169200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:75156400-75167200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:75159000-75167600	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr1:75159400-75167200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr1:75159400-75187400	Weak transcription	NHEK	skin
13	chr1:75159600-75168600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:75159800-75176600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:75160000-75168000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:75160000-75168000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr1:75160000-75168200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:75160000-75169200	Weak transcription	Osteobl	bone
19	chr1:75160000-75169600	Weak transcription	A549	lung
20	chr1:75160000-75169600	Weak transcription	HMEC	breast
21	chr1:75160000-75170200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr1:75160000-75171000	Weak transcription	NH-A	brain
23	chr1:75161400-75171800	Weak transcription	HepG2	liver
24	chr1:75162200-75167800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr1:75162200-75168200	Weak transcription	Left Ventricle	heart
26	chr1:75163800-75168200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr1:75163800-75168600	Weak transcription	Colon Smooth Muscle	Colon
28	chr1:75164000-75176600	Weak transcription	Fetal Intestine Small	intestine
29	chr1:75164000-75176600	Weak transcription	Fetal Stomach	stomach
30	chr1:75164200-75178600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr1:75164600-75169400	Weak transcription	Primary B cells from cord blood	blood

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