Variant report

Variant	rs72855878
Chromosome Location	chr2:31929383-31929384
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs28383001	1.00[AFR][1000 genomes]
rs28383036	0.87[AFR][1000 genomes]
rs28383037	0.87[AFR][1000 genomes]
rs28383076	0.87[AFR][1000 genomes]
rs72855849	1.00[AFR][1000 genomes]
rs72855850	1.00[AFR][1000 genomes]
rs72855855	1.00[AFR][1000 genomes]
rs72855866	1.00[AFR][1000 genomes]
rs72855870	1.00[AFR][1000 genomes]
rs72855873	1.00[AFR][1000 genomes]
rs72855877	1.00[AFR][1000 genomes]
rs72855889	1.00[AFR][1000 genomes]
rs72855893	1.00[AFR][1000 genomes]
rs72867544	1.00[AFR][1000 genomes]
rs72867569	1.00[AFR][1000 genomes]
rs72867575	1.00[AFR][1000 genomes]
rs72867598	1.00[AFR][1000 genomes]
rs72867599	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv1002988	chr2:31767131-31996924	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3376782	chr2:31861607-32046180	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1003376	chr2:31889934-32022595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv978920	chr2:31928970-31931380	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31928200-31931000	Weak transcription	Gastric	stomach
2	chr2:31928800-31929600	Flanking Active TSS	Liver	Liver
3	chr2:31928800-31931400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr2:31929200-31931600	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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