Variant report

Variant	rs72856406
Chromosome Location	chr6:36735065-36735066
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36733583..36737358-chr6:36839243..36844837,5	MCF-7	breast:
2	chr6:36735042..36738016-chr6:36756015..36758776,2	K562	blood:
3	chr6:36733926..36735580-chr6:36737577..36739720,2	K562	blood:
4	chr6:36727502..36729456-chr6:36733982..36738042,3	K562	blood:
5	chr6:36732942..36735975-chr6:36816237..36818800,3	MCF-7	breast:
6	chr6:36734056..36736334-chr6:36826064..36827661,2	MCF-7	breast:
7	chr6:36732636..36735426-chr6:36737432..36739720,3	K562	blood:

Variant related genes	Relation type
ENSG00000198663	Chromatin interaction
ENSG00000137168	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11755091	0.84[ASN][1000 genomes]
rs11757521	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11757761	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11760163	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12524933	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16889055	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72855081	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs916296	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs916298	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs916299	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs916300	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs916301	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs916302	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv524053	chr6:36695223-36747406	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36722800-36748200	Weak transcription	Fetal Kidney	kidney
2	chr6:36723800-36736200	Weak transcription	Right Atrium	heart
3	chr6:36724000-36736200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:36725800-36735400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr6:36726000-36736200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:36727200-36736400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:36727400-36735200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr6:36727400-36736200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr6:36732400-36738600	Enhancers	Fetal Muscle Leg	muscle
10	chr6:36732800-36738800	Enhancers	Primary B cells from cord blood	blood
11	chr6:36732800-36739000	Enhancers	Primary B cells from peripheral blood	blood
12	chr6:36732800-36739600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:36732800-36739800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:36733200-36738600	Enhancers	Fetal Muscle Trunk	muscle
15	chr6:36733400-36735200	Enhancers	Dnd41	blood
16	chr6:36733400-36737400	Weak transcription	Esophagus	oesophagus
17	chr6:36733400-36738600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:36733600-36737000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr6:36733600-36740000	Enhancers	Primary T cells fromperipheralblood	blood
20	chr6:36733800-36736400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:36733800-36736600	Weak transcription	NH-A	brain
22	chr6:36733800-36737000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:36733800-36737400	Weak transcription	Colonic Mucosa	Colon
24	chr6:36733800-36738600	Enhancers	Left Ventricle	heart
25	chr6:36733800-36739600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr6:36734000-36736400	Weak transcription	Fetal Stomach	stomach
27	chr6:36734000-36736400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr6:36734000-36736600	Weak transcription	Colon Smooth Muscle	Colon
29	chr6:36734000-36736600	Weak transcription	Fetal Lung	lung
30	chr6:36734000-36736800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:36734000-36737000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:36734000-36737000	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr6:36734000-36737000	Weak transcription	Spleen	Spleen
34	chr6:36734000-36737000	Weak transcription	NHDF-Ad	bronchial
35	chr6:36734000-36737200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:36734000-36737200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:36734000-36737800	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr6:36734000-36739800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr6:36734200-36735200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr6:36734200-36735200	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr6:36734200-36735400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr6:36734200-36736200	Weak transcription	Pancreas	Pancrea
43	chr6:36734200-36736400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr6:36734200-36736400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr6:36734200-36736800	Weak transcription	Brain Substantia Nigra	brain
46	chr6:36734200-36736800	Weak transcription	Osteobl	bone
47	chr6:36734200-36737000	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr6:36734200-36737400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:36734400-36735400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr6:36734400-36735400	Weak transcription	Fetal Heart	heart

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