Variant report

Variant	rs72857303
Chromosome Location	chr6:37523525-37523526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BCL3	chr6:37522582-37524098	GM12878	blood:	n/a	chr6:37523839-37523848 chr6:37523136-37523145
2	YY1	chr6:37522633-37524053	GM12878	blood:	n/a	chr6:37522777-37522788
3	POU2F2	chr6:37522793-37523553	GM12878	blood:	n/a	n/a
4	BCLAF1	chr6:37521833-37524135	GM12878	blood:	n/a	chr6:37523839-37523848 chr6:37523136-37523145
5	STAT1	chr6:37522805-37523790	GM12878	blood:	n/a	n/a
6	POLR2A	chr6:37520697-37524194	GM12878	blood:	n/a	n/a
7	BRCA1	chr6:37523317-37523664	GM12878	blood:	n/a	n/a
8	POLR2A	chr6:37521340-37526756	GM19193	blood:	n/a	n/a
9	EBF1	chr6:37522653-37524092	GM12878	blood:	n/a	n/a
10	POLR2A	chr6:37520776-37534960	GM12878	blood:	n/a	n/a
11	IRF4	chr6:37523129-37523617	GM12878	blood:	n/a	n/a
12	RELA	chr6:37522057-37524052	GM19193	blood:	n/a	n/a
13	POLR2A	chr6:37521297-37524062	GM12878	blood:	n/a	n/a
14	NFATC1	chr6:37521848-37524121	GM12878	blood:	n/a	n/a
15	POLR2A	chr6:37520832-37526612	GM19099	blood:	n/a	n/a
16	STAT3	chr6:37522801-37523903	GM12878	blood:	n/a	chr6:37523839-37523850
17	PAX5	chr6:37522864-37523675	GM12878	blood:	n/a	n/a
18	ELK1	chr6:37522716-37523812	GM12878	blood:	n/a	n/a
19	POLR2A	chr6:37520547-37531951	GM12878	blood:	n/a	n/a
20	POLR2A	chr6:37520802-37524050	GM12891	blood:	n/a	n/a
21	RELA	chr6:37522084-37524071	GM15510	blood:	n/a	n/a
22	EBF1	chr6:37521269-37524078	GM12878	blood:	n/a	chr6:37522366-37522375
23	RELA	chr6:37521252-37524044	GM12892	blood:	n/a	chr6:37521471-37521480 chr6:37521471-37521480
24	NFATC1	chr6:37521844-37524156	GM12878	blood:	n/a	n/a
25	POLR2A	chr6:37520612-37525717	GM12892	blood:	n/a	n/a
26	RELA	chr6:37520894-37524099	GM10847	blood:	n/a	chr6:37521471-37521480 chr6:37521471-37521480
27	YY1	chr6:37523207-37523913	GM12892	blood:	n/a	n/a
28	POLR2A	chr6:37520940-37524055	GM18951	blood:	n/a	n/a
29	TBP	chr6:37521146-37523960	GM12878	blood:	n/a	n/a
30	EP300	chr6:37522793-37524017	GM12878	blood:	n/a	chr6:37523698-37523712 chr6:37523775-37523784
31	RELA	chr6:37522023-37524086	GM18951	blood:	n/a	n/a
32	NFIC	chr6:37520824-37524162	GM12878	blood:	n/a	n/a
33	ELF1	chr6:37522480-37523987	GM12878	blood:	n/a	chr6:37523773-37523786 chr6:37523775-37523786
34	RCOR1	chr6:37522034-37524070	GM12878	blood:	n/a	n/a
35	POLR2A	chr6:37521193-37524034	GM12891	blood:	n/a	n/a
36	PAX5	chr6:37522720-37523911	GM12878	blood:	n/a	chr6:37523698-37523707 chr6:37523839-37523848
37	USF2	chr6:37522857-37524199	GM12878	blood:	n/a	n/a
38	TAF1	chr6:37523153-37523677	GM12891	blood:	n/a	n/a
39	TAF1	chr6:37523270-37523772	GM12891	blood:	n/a	n/a
40	MTA3	chr6:37520664-37526519	GM12878	blood:	n/a	n/a
41	MXI1	chr6:37522793-37524047	GM12878	blood:	n/a	n/a
42	SMC3	chr6:37522848-37523993	GM12878	blood:	n/a	n/a
43	POLR2A	chr6:37521325-37524076	GM18526	blood:	n/a	n/a
44	NRF1	chr6:37522977-37523939	GM12878	blood:	n/a	n/a
45	RUNX3	chr6:37521853-37524132	GM12878	blood:	n/a	n/a
46	ATF2	chr6:37521835-37524157	GM12878	blood:	n/a	n/a
47	BATF	chr6:37523197-37523974	GM12878	blood:	n/a	chr6:37523605-37523614
48	BCLAF1	chr6:37521860-37524118	GM12878	blood:	n/a	chr6:37523839-37523848 chr6:37523136-37523145
49	FOXM1	chr6:37522620-37524031	GM12878	blood:	n/a	n/a
50	POU2F2	chr6:37521931-37523754	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
MIR4462	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs6918006	0.92[ASN][1000 genomes]
rs6918266	0.92[ASN][1000 genomes]
rs7741573	0.92[ASN][1000 genomes]
rs9470620	0.92[ASN][1000 genomes]
rs9470624	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1016310	chr6:37473075-37528469	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	esv1006017	chr6:37516345-37530226	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37504400-37529200	Weak transcription	Right Atrium	heart
2	chr6:37510800-37533800	Enhancers	Primary B cells from peripheral blood	blood
3	chr6:37516400-37527000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr6:37517400-37526200	Weak transcription	Thymus	Thymus
5	chr6:37518800-37523800	Enhancers	Fetal Brain Male	brain
6	chr6:37519400-37524800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:37519800-37523800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:37520000-37523600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:37520200-37523600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:37520800-37523800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:37520800-37523800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:37520800-37524000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:37521200-37526400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:37521200-37533800	Enhancers	Primary B cells from cord blood	blood
15	chr6:37521400-37523600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:37521400-37523800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr6:37521400-37525800	Weak transcription	Fetal Brain Female	brain
18	chr6:37521400-37527600	Enhancers	Fetal Thymus	thymus
19	chr6:37521600-37526600	Weak transcription	Primary T cells from cord blood	blood
20	chr6:37521600-37526800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr6:37521600-37526800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr6:37521800-37524600	Weak transcription	Fetal Lung	lung
23	chr6:37522000-37524000	Flanking Active TSS	GM12878-XiMat	blood
24	chr6:37522000-37525800	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr6:37522200-37523800	Enhancers	NH-A	brain
26	chr6:37522200-37526600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr6:37522200-37527000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr6:37522200-37533600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr6:37522400-37524400	Weak transcription	Fetal Kidney	kidney
30	chr6:37522400-37525600	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr6:37522400-37525600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:37522400-37526400	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr6:37522400-37526600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr6:37522600-37524000	Weak transcription	HSMM	muscle
35	chr6:37522600-37526600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
36	chr6:37522800-37523600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
37	chr6:37522800-37523600	Enhancers	Brain Germinal Matrix	brain
38	chr6:37522800-37524000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr6:37522800-37525400	Weak transcription	HMEC	breast
40	chr6:37523200-37524600	Weak transcription	A549	lung
41	chr6:37523200-37525800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:37523400-37523600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
43	chr6:37523400-37524400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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