Variant report

Variant	rs7285895
Chromosome Location	chr22:32464176-32464177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11912173	1.00[EUR][1000 genomes]
rs11912190	1.00[EUR][1000 genomes]
rs11912193	1.00[EUR][1000 genomes]
rs11912347	1.00[EUR][1000 genomes]
rs11912545	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11913032	1.00[ASW][hapmap];0.86[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11913162	1.00[ASW][hapmap];0.86[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11913545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11913959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61746393	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8140300	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055450	chr22:32356150-32468832	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1061546	chr22:32358991-32464350	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1060529	chr22:32370432-32525699	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
4	nsv834177	chr22:32416679-32594663	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	esv1803811	chr22:32441022-32509431	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv948789	chr22:32462505-32764760	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32442200-32468400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr22:32442200-32469200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr22:32457800-32469400	Weak transcription	Right Ventricle	heart
4	chr22:32460000-32467000	Genic enhancers	Fetal Intestine Small	intestine
5	chr22:32460400-32476000	Weak transcription	Pancreas	Pancrea
6	chr22:32462400-32464200	Enhancers	Left Ventricle	heart
7	chr22:32462400-32468400	Strong transcription	Duodenum Mucosa	Duodenum
8	chr22:32463000-32472000	Weak transcription	Right Atrium	heart
9	chr22:32463200-32464600	Weak transcription	Fetal Heart	heart
10	chr22:32463400-32469400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr22:32463800-32472000	Weak transcription	Colonic Mucosa	Colon
12	chr22:32464000-32464600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr22:32464000-32464600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr22:32464000-32466800	Genic enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
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