The 2.0 version of rSNPBase

Variant report

Variant rs72859548
Chromosome Location chr1:10050083-10050084
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:10032800-10057000 Weak transcription Psoas Muscle Psoas
2 chr1:10035600-10051800 Weak transcription iPS-15b Cell Line embryonic stem cell
3 chr1:10036000-10050400 Weak transcription Primary hematopoietic stem cells blood
4 chr1:10036800-10051200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
5 chr1:10037200-10054600 Weak transcription Fetal Brain Female brain
6 chr1:10039400-10050800 Weak transcription Colonic Mucosa Colon
7 chr1:10039600-10053600 Weak transcription Colon Smooth Muscle Colon
8 chr1:10042600-10050200 Weak transcription Lung lung
9 chr1:10042600-10050800 Weak transcription GM12878-XiMat blood
10 chr1:10042600-10053800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr1:10042800-10050200 Weak transcription Primary T cells fromperipheralblood blood
12 chr1:10042800-10050600 Weak transcription Pancreas Pancrea
13 chr1:10042800-10050800 Weak transcription Primary hematopoietic stem cells short term culture blood
14 chr1:10042800-10051200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
15 chr1:10042800-10051200 Weak transcription HSMMtube muscle
16 chr1:10042800-10051600 Weak transcription Fetal Thymus thymus
17 chr1:10042800-10051600 Weak transcription Rectal Smooth Muscle rectum
18 chr1:10042800-10053000 Weak transcription Duodenum Smooth Muscle Duodenum
19 chr1:10042800-10055600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
20 chr1:10042800-10056600 Weak transcription Cortex derived primary cultured neurospheres brain
21 chr1:10042800-10057200 Weak transcription Gastric stomach
22 chr1:10043000-10050400 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr1:10043000-10050600 Weak transcription Primary T regulatory cells fromperipheralblood blood
24 chr1:10044200-10050400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
25 chr1:10044200-10050400 Weak transcription Stomach Smooth Muscle stomach
26 chr1:10044200-10050600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
27 chr1:10044200-10050800 Weak transcription Muscle Satellite Cultured Cells --
28 chr1:10044400-10050200 Weak transcription Primary T cells from cord blood blood
29 chr1:10044600-10050800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
30 chr1:10044600-10054800 Weak transcription Fetal Intestine Large intestine
31 chr1:10044800-10051000 Weak transcription Primary B cells from peripheral blood blood
32 chr1:10044800-10056000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr1:10045200-10053200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
34 chr1:10045400-10050200 Weak transcription Fetal Muscle Leg muscle
35 chr1:10045400-10050600 Weak transcription Breast Myoepithelial Primary Cells Breast
36 chr1:10045400-10051600 Weak transcription Duodenum Mucosa Duodenum
37 chr1:10045400-10056600 Weak transcription Brain Angular Gyrus brain
38 chr1:10045400-10057000 Weak transcription Brain Substantia Nigra brain
39 chr1:10045600-10056600 Weak transcription Brain Hippocampus Middle brain
40 chr1:10045600-10056600 Weak transcription Fetal Heart heart
41 chr1:10046200-10051800 Weak transcription Fetal Intestine Small intestine
42 chr1:10046200-10057000 Weak transcription Ovary ovary
43 chr1:10046400-10054800 Weak transcription Rectal Mucosa Donor 29 rectum
44 chr1:10046600-10050400 Weak transcription Liver Liver
45 chr1:10047200-10052400 Weak transcription Fetal Stomach stomach
46 chr1:10049000-10054200 Enhancers Primary monocytes fromperipheralblood blood
47 chr1:10049400-10050400 Enhancers Primary neutrophils fromperipheralblood blood
48 chr1:10049600-10052400 Enhancers Fetal Adrenal Gland Adrenal Gland
49 chr1:10049600-10054000 Enhancers Adipose Nuclei Adipose
50 chr1:10049800-10050400 Weak transcription Primary mononuclear cells fromperipheralblood Blood

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Last update: Aug 31, 2015