Variant report

Variant	rs72859586
Chromosome Location	chr1:10110135-10110136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:10108121..10110683-chr1:10111233..10113917,2	K562	blood:
2	chr1:10104211..10106912-chr1:10107965..10110739,3	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs57906726	0.84[AFR][1000 genomes]
rs59870161	0.92[AFR][1000 genomes]
rs72859572	0.84[AFR][1000 genomes]
rs72859595	1.00[AFR][1000 genomes]
rs72859599	1.00[AFR][1000 genomes]
rs72859602	1.00[AFR][1000 genomes]
rs72861420	1.00[AFR][1000 genomes]
rs72861424	1.00[AFR][1000 genomes]
rs72861427	0.92[AFR][1000 genomes]
rs72861436	0.92[AFR][1000 genomes]
rs72861437	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417409	chr1:9683992-10241703	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1012469	chr1:9925714-10147796	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1012301	chr1:9963962-10118393	Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv534853	chr1:9963962-10118393	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv1001742	chr1:9971776-10116767	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	nsv527217	chr1:10093457-10257167	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10094800-10119400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:10095000-10111400	Weak transcription	GM12878-XiMat	blood
3	chr1:10095000-10115000	Weak transcription	A549	lung
4	chr1:10095000-10115400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr1:10095000-10116000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr1:10095000-10116200	Weak transcription	HSMM	muscle
7	chr1:10095000-10127800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:10095000-10147600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr1:10095200-10134400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr1:10095400-10115600	Weak transcription	HUVEC	blood vessel
11	chr1:10098800-10116000	Weak transcription	Hela-S3	cervix
12	chr1:10098800-10131200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr1:10101800-10113400	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr1:10103000-10116200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:10105200-10113200	Strong transcription	Primary T cells from cord blood	blood
16	chr1:10105600-10110200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr1:10106400-10110200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr1:10106400-10110400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr1:10106400-10111000	Weak transcription	HSMMtube	muscle
20	chr1:10106400-10134000	Weak transcription	Colonic Mucosa	Colon
21	chr1:10106600-10110400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr1:10106600-10110400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:10106800-10110200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr1:10106800-10115000	Weak transcription	HepG2	liver
25	chr1:10106800-10116600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr1:10106800-10118000	Weak transcription	Fetal Kidney	kidney
27	chr1:10106800-10128400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr1:10106800-10134200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr1:10106800-10155400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr1:10107000-10111000	Weak transcription	Fetal Intestine Large	intestine
31	chr1:10107000-10115400	Weak transcription	NHDF-Ad	bronchial
32	chr1:10107000-10115600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr1:10107000-10115600	Weak transcription	Lung	lung
34	chr1:10107000-10117600	Weak transcription	Aorta	Aorta
35	chr1:10107000-10118600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr1:10107000-10125200	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr1:10107000-10125200	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr1:10107000-10125400	Weak transcription	Small Intestine	intestine
39	chr1:10107000-10140600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr1:10107200-10110400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr1:10107200-10110400	Weak transcription	Fetal Lung	lung
42	chr1:10107200-10111000	Weak transcription	Placenta	Placenta
43	chr1:10107200-10114400	Weak transcription	Brain Germinal Matrix	brain
44	chr1:10107200-10115400	Weak transcription	NHEK	skin
45	chr1:10107200-10115400	Weak transcription	NHLF	lung
46	chr1:10107200-10116600	Weak transcription	Right Atrium	heart
47	chr1:10107200-10116800	Weak transcription	Gastric	stomach
48	chr1:10107200-10118600	Weak transcription	Spleen	Spleen
49	chr1:10107200-10118800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr1:10107200-10124000	Weak transcription	Fetal Brain Female	brain

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