Variant report

Variant	rs72860254
Chromosome Location	chr4:78023905-78023906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11737413	0.84[ASN][1000 genomes]
rs57011953	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57498549	0.88[ASN][1000 genomes]
rs60645850	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72860237	0.87[ASN][1000 genomes]
rs72860266	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72860268	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72860270	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7669246	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7669540	1.00[ASN][1000 genomes]
rs7699175	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435704	chr4:78023078-78025626	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78017200-78025800	Weak transcription	HMEC	breast
2	chr4:78017200-78026000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:78019200-78025000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:78021000-78025800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr4:78021800-78026000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr4:78021800-78026000	Weak transcription	Pancreas	Pancrea
7	chr4:78021800-78026000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:78022000-78024800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:78022000-78025800	Weak transcription	Fetal Thymus	thymus
10	chr4:78022200-78024800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:78022200-78025800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:78022200-78025800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:78022200-78025800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr4:78022200-78025800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr4:78022200-78025800	Weak transcription	Left Ventricle	heart
16	chr4:78022200-78025800	Weak transcription	Right Atrium	heart
17	chr4:78022400-78024600	Weak transcription	Primary B cells from cord blood	blood
18	chr4:78022600-78025600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr4:78022600-78025800	Weak transcription	Small Intestine	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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