Variant report

Variant	rs72860458
Chromosome Location	chr4:78394277-78394278
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs72860451	0.88[AFR][1000 genomes]
rs72860467	0.88[AFR][1000 genomes]
rs72860468	0.88[AFR][1000 genomes]
rs72860470	0.88[AFR][1000 genomes]
rs72860476	0.86[AFR][1000 genomes]
rs72860477	0.86[AFR][1000 genomes]
rs72860482	0.86[AFR][1000 genomes]
rs7654195	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829974	chr4:78240718-78415642	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3434529	chr4:78388030-78470631	Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78388000-78394400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:78392600-78394800	Enhancers	Esophagus	oesophagus
3	chr4:78393000-78394600	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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