Variant report

Variant	rs72862192
Chromosome Location	chr2:35666785-35666786
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10439446	1.00[EUR][1000 genomes]
rs10439447	1.00[EUR][1000 genomes]
rs1439706	1.00[EUR][1000 genomes]
rs1439707	1.00[EUR][1000 genomes]
rs17016840	1.00[EUR][1000 genomes]
rs17016843	1.00[EUR][1000 genomes]
rs17016844	1.00[EUR][1000 genomes]
rs17016860	1.00[EUR][1000 genomes]
rs17016864	1.00[EUR][1000 genomes]
rs17016884	1.00[EUR][1000 genomes]
rs17016890	1.00[EUR][1000 genomes]
rs17038746	1.00[EUR][1000 genomes]
rs2218131	1.00[EUR][1000 genomes]
rs4286254	1.00[EUR][1000 genomes]
rs4287746	1.00[EUR][1000 genomes]
rs4289165	1.00[EUR][1000 genomes]
rs4289166	1.00[EUR][1000 genomes]
rs4581879	1.00[EUR][1000 genomes]
rs4627541	1.00[EUR][1000 genomes]
rs59087983	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6731097	1.00[EUR][1000 genomes]
rs73922148	1.00[EUR][1000 genomes]
rs7605027	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010722	chr2:35072575-35950219	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv519522	chr2:35425529-35861883	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1008651	chr2:35469467-35896486	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv999139	chr2:35483033-35860024	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv535636	chr2:35483033-35860024	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1005352	chr2:35509710-35680146	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv535637	chr2:35509710-35680146	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv873847	chr2:35601392-35670651	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv873848	chr2:35641532-35973963	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:35661800-35668400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr2:35662600-35667600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:35662600-35668000	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr2:35664000-35667400	Active TSS	H9 Cell Line	embryonic stem cell
5	chr2:35664200-35668200	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr2:35666200-35667400	Active TSS	H1 Cell Line	embryonic stem cell
7	chr2:35666200-35667400	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr2:35666200-35667600	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr2:35666400-35667000	Active TSS	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links