Variant report

Variant	rs72864829
Chromosome Location	chr2:37572465-37572466
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37558808..37561496-chr2:37570984..37573398,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000207364	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57427583	0.81[AFR][1000 genomes]
rs60630293	0.84[AFR][1000 genomes]
rs72864803	0.81[AFR][1000 genomes]
rs72864832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72864834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72864841	0.81[AFR][1000 genomes]
rs7578346	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv2685	chr2:37550096-37594923	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37571000-37572800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:37571000-37572800	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr2:37571400-37572600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
4	chr2:37571400-37572600	Active TSS	H9 Cell Line	embryonic stem cell
5	chr2:37571400-37572600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:37571400-37572600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr2:37571400-37572600	Flanking Active TSS	Adipose Nuclei	Adipose
8	chr2:37571400-37572600	Active TSS	Brain Substantia Nigra	brain
9	chr2:37571400-37572600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
10	chr2:37571400-37572600	Active TSS	Fetal Kidney	kidney
11	chr2:37571400-37572600	Active TSS	Fetal Lung	lung
12	chr2:37571400-37572600	Flanking Active TSS	Stomach Smooth Muscle	stomach
13	chr2:37571400-37572600	Active TSS	NHLF	lung
14	chr2:37571400-37572800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
15	chr2:37571400-37572800	Flanking Active TSS	Primary B cells from cord blood	blood
16	chr2:37571400-37572800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr2:37571400-37572800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr2:37571400-37572800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr2:37571400-37572800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
20	chr2:37571400-37572800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr2:37571400-37572800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:37571400-37572800	Bivalent/Poised TSS	Brain Germinal Matrix	brain
23	chr2:37571600-37572600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr2:37571600-37572600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
25	chr2:37571600-37572600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
26	chr2:37571600-37572600	Active TSS	iPS-18 Cell Line	embryonic stem cell
27	chr2:37571600-37572600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
28	chr2:37571600-37572600	Active TSS	Aorta	Aorta
29	chr2:37571600-37572600	Flanking Active TSS	Liver	Liver
30	chr2:37571600-37572600	Active TSS	Brain Angular Gyrus	brain
31	chr2:37571600-37572600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
32	chr2:37571600-37572600	Active TSS	Ovary	ovary
33	chr2:37571600-37572600	Flanking Active TSS	Right Ventricle	heart
34	chr2:37571600-37572600	Flanking Bivalent TSS/Enh	Thymus	Thymus
35	chr2:37571600-37572600	Active TSS	A549	lung
36	chr2:37571600-37572600	Flanking Active TSS	HMEC	breast
37	chr2:37571600-37572800	Active TSS	ES-I3 Cell Line	embryonic stem cell
38	chr2:37571600-37572800	Active TSS	HUES6 Cell Line	embryonic stem cell
39	chr2:37571600-37572800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr2:37571600-37572800	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
41	chr2:37571600-37572800	Active TSS	Brain Cingulate Gyrus	brain
42	chr2:37571600-37572800	Active TSS	Brain Hippocampus Middle	brain
43	chr2:37571600-37572800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
44	chr2:37571600-37572800	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
45	chr2:37571600-37572800	Active TSS	Rectal Smooth Muscle	rectum
46	chr2:37571600-37572800	Active TSS	Right Atrium	heart
47	chr2:37571600-37572800	Active TSS	NHDF-Ad	bronchial
48	chr2:37571600-37574600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr2:37571800-37572600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr2:37571800-37572600	Flanking Active TSS	Placenta	Placenta

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